Factsheet for TraesCS1D01G428400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G420500.1	Wheat	cytosol	95.54	96.98
TraesCS1B01G451500.1	Wheat	cytosol	94.49	95.92
HORVU1Hr1G091820.1	Barley	nucleus	91.96	92.65
OQU92158	Sorghum	nucleus	76.34	78.44
KXG26091	Sorghum	nucleus	76.04	78.25
Zm00001d004025_P001	Maize	nucleus	75.6	77.79
Zm00001d004033_P001	Maize	nucleus	75.0	77.18
Zm00001d047099_P001	Maize	nucleus	35.57	70.09
KRH26350	Soybean	nucleus	61.16	64.62
KRH44087	Soybean	nucleus	60.71	64.05
GSMUA_Achr2P05590_001	Banana	nucleus	54.17	62.01
PGSC0003DMT400008515	Potato	nucleus	59.82	61.85
VIT_01s0011g00790.t01	Wine grape	nucleus	59.08	61.17
Solyc01g096700.2.1	Tomato	nucleus	54.76	60.33
CDY11348	Canola	nucleus	21.58	59.92
CDY08525	Canola	nucleus	56.1	58.91
Bra034841.1-P	Field mustard	nucleus	56.1	58.91
CDY56850	Canola	nucleus	55.36	58.03
AT3G11450.1	Thale cress	nucleus	55.65	57.81
Bra005877.1-P	Field mustard	nucleus, plastid	39.29	57.64
AT5G06110.1	Thale cress	nucleus	55.95	56.71
Bra005875.1-P	Field mustard	nucleus	39.58	55.88
CDY11351	Canola	nucleus	31.1	55.73
CDX80982	Canola	nucleus	34.97	55.69
CDX80983	Canola	nucleus	31.4	55.38
Zm00001d047097_P001	Maize	nucleus	32.14	54.68
Os04t0377932-00	Rice	nucleus	21.28	53.76
CDX73875	Canola	nucleus	49.11	52.72
Bra008278.1-P	Field mustard	nucleus	17.56	51.98
Bra001404.1-P	Field mustard	nucleus	48.96	51.17
CDY53316	Canola	nucleus	49.4	50.69
CDY11583	Canola	plastid	19.49	42.95
TraesCS7D01G294900.1	Wheat	nucleus	11.61	25.16

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.287.110	MapMan:19.1.2.3	ncoils:Coil	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR001623
InterPro:IPR017877	InterPro:IPR036869	InterPro:J_dom_sf	InterPro:Myb-like_dom	PFAM:PF00226	PFAM:PF00249
PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS50090	PANTHER:PTHR43999	InterPro:SANT/Myb
SMART:SM00271	SMART:SM00717	SUPFAM:SSF46565	SUPFAM:SSF46689	EnsemblPlantsGene:TraesCS1D01G428400	EnsemblPlants:TraesCS1D01G428400.1
TIGR:cd00167	TIGR:cd06257	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:+:480574975..480577725

Molecular Weight (calculated)

75865.9 Da

IEP (calculated)

8.652

GRAVY (calculated)

-0.927

Length

672 amino acids

Sequence
(BLAST)

001: MGSKRTCLLI TYYPEIVDGV PLYVSSNCLP VKASKYEPAG HSFHAVALKL RGLDEKEDTE TDDRSVSSDD KSQDFSAGSD NFSSKGKKKS GSGSQQQDHY
101: ALLGLGNLRF LATEDQIRKS YRDMALKHHP DKQAALLLHE TTEAAKQAKK DEIESHFKAI QEAYEVLMDS TKRRIFDSTD EFDDDIPTDC APQDFFKVFG
201: PAFMRNGRWS VTQPIPSLGD DATPVVDVDQ FYNFWYNFKS WREFPHEDEY DLEQAESREH KRWMERQNAK IQEKAKKVEY TRVRNLVDNA YRKDPRIQRR
301: KEQEKAEKQR RKEAKYMAKK LQEEEAARAA EEERKRKEEE AKIAAAAADI RKKLKEKEKK LLRKEKNRLR TLVGQVVGES HFNLSKEDVE TVCTSHDFEQ
401: LKKLCDIMED KDTAEKARLL RGALSKEENS SNTSKEEKIH ANGVADSTPK STVPQGTPKS TAPQVITLGN NEKKEKEWGK EEVELLRKAT QKYPKGTNKR
501: WEVIAEFIGT GRSVDEILKA TKTVLLQKPD SSKAFNSFLE KRKAAPSIVS PLSTRDETAG GSTVGAGTEP SKAAEQPAAS SSQTANEKTG ADPVPEEAPS
601: ATDPDAWSEA QVLALVQALK AFPKDANQRW ERVAAAVPGK TVVQCKKKVT SMRTNFRTKK LATQEEDWSI AF

Best Arabidopsis Sequence Match ( AT3G11450.1 )
(BLAST)

001: MPSRRSESAI RLITYSEELV DGKPFFAFSN CLPVKALNRE PAGHAFHSAA LKLHGCAEEP TDDEGGDKKV GDDKEKEYVP SFNSYANKGK KKSGTQQQDH
101: YALLGLSNLR YLATEDQIRK SYREAALKHH PDKLASLLLL EETEEAKEAK KDEIESRFKA IQEAYEVLMD PTRRRIFDST DEFDDEVPSD CLPQDFFKVF
201: GPAFKRNARW SVNQRIPDLG DENTPLKDVD KFYNFWYAFK SWREFPDEEE HDLEQADSRE ERRWMEKENA KKTVKARKEE HARIRTLVDN AYRKDPRIVK
301: RKEEEKAEKQ QKKDAKIQAK KKQEEDAAIA AEEEKRRKEE EEKRAAESAQ QQKKTKEREK KLLRKERNRL RTLSAPLVAQ RLLDISEEDI ENLCMSLNTE
401: QLQNLCDKMG NKEGLELAKV IKDGCNSSRN DEAESKEKVS KKTNGGTEPT TRVSQLDSST QKKQPWSKEE IDMLRKGMIK YPKGTSRRWE VISEYIGTGR
501: SVEEILKATK TVLLQKPDSA KAFDSFLEKR KPSASITSPL STREELGESL PTMTTTTNAK PSKETVVGKS SSSQSSDNNG EVGGSSDADS WSTVQERALV
601: QALKTFPKET SQRWERVAAA VPGKTMNQCK KKFAELKEII RNKKTGV

Arabidopsis Description

DnaJ and Myb-like DNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J6A8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.