Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d004033_P001 | Maize | nucleus | 58.27 | 23.74 |
| Zm00001d004025_P001 | Maize | nucleus | 57.14 | 23.28 |
| OQU92158 | Sorghum | nucleus | 56.77 | 23.09 |
| KXG26091 | Sorghum | nucleus | 56.02 | 22.82 |
| HORVU1Hr1G091820.1 | Barley | nucleus | 56.77 | 22.64 |
| Zm00001d047097_P001 | Maize | nucleus | 33.08 | 22.28 |
| TraesCS1A01G420500.1 | Wheat | cytosol | 53.76 | 21.6 |
| TraesCS1D01G428400.1 | Wheat | nucleus | 53.76 | 21.28 |
| TraesCS1B01G451500.1 | Wheat | cytosol | 52.63 | 21.15 |
| Solyc01g096700.2.1 | Tomato | nucleus | 47.74 | 20.82 |
| PGSC0003DMT400008515 | Potato | nucleus | 49.62 | 20.31 |
| GSMUA_Achr2P05590_001 | Banana | nucleus | 44.36 | 20.1 |
| KRH44087 | Soybean | nucleus | 48.12 | 20.09 |
| KRH26350 | Soybean | nucleus | 47.74 | 19.97 |
| VIT_01s0011g00790.t01 | Wine grape | nucleus | 48.12 | 19.72 |
| CDY56850 | Canola | nucleus | 47.37 | 19.66 |
| CDY08525 | Canola | nucleus | 46.99 | 19.53 |
| Bra034841.1-P | Field mustard | nucleus | 46.99 | 19.53 |
| AT3G11450.1 | Thale cress | nucleus | 47.37 | 19.47 |
| CDX73875 | Canola | nucleus | 45.49 | 19.33 |
| Os08t0159000-01 | Rice | nucleus | 23.31 | 19.08 |
| Bra001404.1-P | Field mustard | nucleus | 44.74 | 18.51 |
| Zm00001d047099_P001 | Maize | nucleus | 23.68 | 18.48 |
| AT5G06110.1 | Thale cress | nucleus | 45.49 | 18.25 |
| CDY53316 | Canola | nucleus | 44.36 | 18.02 |
| Bra008278.1-P | Field mustard | nucleus | 9.4 | 11.01 |
| CDY11348 | Canola | nucleus | 9.02 | 9.92 |
| CDY11583 | Canola | plastid | 10.9 | 9.51 |
| CDX80983 | Canola | nucleus | 9.77 | 6.82 |
| CDY11351 | Canola | nucleus | 9.4 | 6.67 |
| CDX80982 | Canola | nucleus | 10.53 | 6.64 |
| Bra005877.1-P | Field mustard | nucleus, plastid | 9.77 | 5.68 |
| Bra005875.1-P | Field mustard | nucleus | 9.77 | 5.46 |
Protein Annotations
| EnsemblPlants:Os04t0377932-00 | EnsemblPlantsGene:Os04g0377932 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| InterPro:Homeobox-like_sf | InterPro:SANT/Myb | PANTHER:PTHR43999 | PFAM:PF00249 | ProteinID:BAS88864.1 | SEG:seg |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0001BFE29C | UniProt:A0A0P0W9B8 | MapMan:19.1.2.3 | : |
Description
Similar to Gonidia forming protein GlsA. (Os04t0377932-00)
Coordinates
chr4:-:18458075..18458875
Molecular Weight (calculated)
28620.9 Da
IEP (calculated)
10.380
GRAVY (calculated)
-0.778
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MERLKKLCDS MENKDTTEKA RLLSGALSKE GSSGTSNEGK KIQANGVDGS KAKSTSSGEK VTQGNTLSNY EKKEEKPWGR EEIELLRKAI QKYPKGTSRR
101: WEVVSEFIGT GRSVEEILKA TKTVLLQKPD STKAFDSFLE KRKPAPSIAS PLSVRTETVG LPTEKAAGNA SSKAPAQHAS SKTSDEKAAA PAPAPVSNGT
201: PSGTADPEAW SEAQVLALVQ ALKAFPKDAS QRWERVAAAV PGKTMVQCKK KVAEMQKNFR SKKSAE
101: WEVVSEFIGT GRSVEEILKA TKTVLLQKPD STKAFDSFLE KRKPAPSIAS PLSVRTETVG LPTEKAAGNA SSKAPAQHAS SKTSDEKAAA PAPAPVSNGT
201: PSGTADPEAW SEAQVLALVQ ALKAFPKDAS QRWERVAAAV PGKTMVQCKK KVAEMQKNFR SKKSAE
001: MPSRRSESAI RLITYSEELV DGKPFFAFSN CLPVKALNRE PAGHAFHSAA LKLHGCAEEP TDDEGGDKKV GDDKEKEYVP SFNSYANKGK KKSGTQQQDH
101: YALLGLSNLR YLATEDQIRK SYREAALKHH PDKLASLLLL EETEEAKEAK KDEIESRFKA IQEAYEVLMD PTRRRIFDST DEFDDEVPSD CLPQDFFKVF
201: GPAFKRNARW SVNQRIPDLG DENTPLKDVD KFYNFWYAFK SWREFPDEEE HDLEQADSRE ERRWMEKENA KKTVKARKEE HARIRTLVDN AYRKDPRIVK
301: RKEEEKAEKQ QKKDAKIQAK KKQEEDAAIA AEEEKRRKEE EEKRAAESAQ QQKKTKEREK KLLRKERNRL RTLSAPLVAQ RLLDISEEDI ENLCMSLNTE
401: QLQNLCDKMG NKEGLELAKV IKDGCNSSRN DEAESKEKVS KKTNGGTEPT TRVSQLDSST QKKQPWSKEE IDMLRKGMIK YPKGTSRRWE VISEYIGTGR
501: SVEEILKATK TVLLQKPDSA KAFDSFLEKR KPSASITSPL STREELGESL PTMTTTTNAK PSKETVVGKS SSSQSSDNNG EVGGSSDADS WSTVQERALV
601: QALKTFPKET SQRWERVAAA VPGKTMNQCK KKFAELKEII RNKKTGV
101: YALLGLSNLR YLATEDQIRK SYREAALKHH PDKLASLLLL EETEEAKEAK KDEIESRFKA IQEAYEVLMD PTRRRIFDST DEFDDEVPSD CLPQDFFKVF
201: GPAFKRNARW SVNQRIPDLG DENTPLKDVD KFYNFWYAFK SWREFPDEEE HDLEQADSRE ERRWMEKENA KKTVKARKEE HARIRTLVDN AYRKDPRIVK
301: RKEEEKAEKQ QKKDAKIQAK KKQEEDAAIA AEEEKRRKEE EEKRAAESAQ QQKKTKEREK KLLRKERNRL RTLSAPLVAQ RLLDISEEDI ENLCMSLNTE
401: QLQNLCDKMG NKEGLELAKV IKDGCNSSRN DEAESKEKVS KKTNGGTEPT TRVSQLDSST QKKQPWSKEE IDMLRKGMIK YPKGTSRRWE VISEYIGTGR
501: SVEEILKATK TVLLQKPDSA KAFDSFLEKR KPSASITSPL STREELGESL PTMTTTTNAK PSKETVVGKS SSSQSSDNNG EVGGSSDADS WSTVQERALV
601: QALKTFPKET SQRWERVAAA VPGKTMNQCK KKFAELKEII RNKKTGV
Arabidopsis Description
DnaJ and Myb-like DNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J6A8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.