CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034841.1-P	Field mustard	nucleus	89.86	90.0
CDY08525	Canola	nucleus	89.55	89.69
AT3G11450.1	Thale cress	nucleus	82.37	81.61
CDX73875	Canola	nucleus	69.11	70.77
CDY11348	Canola	nucleus	26.37	69.83
CDY53316	Canola	nucleus	69.58	68.09
CDX80982	Canola	nucleus	43.37	65.88
KRH44087	Soybean	nucleus	65.05	65.46
KRH26350	Soybean	nucleus	64.9	65.41
CDY11351	Canola	nucleus	37.91	64.8
VIT_01s0011g00790.t01	Wine grape	nucleus	65.05	64.25
CDX80983	Canola	nucleus	37.91	63.78
PGSC0003DMT400008515	Potato	nucleus	64.27	63.38
Solyc01g096700.2.1	Tomato	nucleus	59.28	62.3
OQU92158	Sorghum	nucleus	60.53	59.33
GSMUA_Achr2P05590_001	Banana	nucleus	54.13	59.11
KXG26091	Sorghum	nucleus	59.44	58.35
Zm00001d004033_P001	Maize	nucleus	59.28	58.19
Zm00001d004025_P001	Maize	nucleus	59.13	58.04
HORVU1Hr1G091820.1	Barley	nucleus	59.44	57.12
TraesCS1A01G420500.1	Wheat	cytosol	58.35	56.5
TraesCS1B01G451500.1	Wheat	cytosol	58.03	56.19
TraesCS1D01G428400.1	Wheat	nucleus	58.03	55.36
CDY11583	Canola	plastid	24.18	50.82
Zm00001d047099_P001	Maize	nucleus	25.59	48.09
Os04t0377932-00	Rice	nucleus	19.66	47.37
Zm00001d047097_P001	Maize	nucleus	22.93	37.22
CDY38980	Canola	nucleus	12.01	26.01
CDY39426	Canola	nucleus	11.39	24.5

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.287.110	MapMan:19.1.2.3	GO:A0A078J397	UniProt:A0A078J397	EnsemblPlants:CDY56850
ProteinID:CDY56850	ProteinID:CDY56850.1	ncoils:Coil	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00020137001	InterPro:Homeobox-like_sf	InterPro:IPR001623	InterPro:IPR017877	InterPro:IPR017884
InterPro:IPR036869	InterPro:J_dom_sf	InterPro:Myb-like_dom	PFAM:PF00226	PFAM:PF00249	PRINTS:PR00625
ScanProsite:PS00636	PFscan:PS50076	PFscan:PS50090	PFscan:PS51293	PANTHER:PTHR43999	InterPro:SANT/Myb
InterPro:SANT_dom	SMART:SM00271	SMART:SM00717	SUPFAM:SSF46565	SUPFAM:SSF46689	UniParc:UPI0004EE97B7
SEG:seg	:	:	:	:	:

Description

BnaCnng31270DBnaCnng31270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J397]

Coordinates

chrLK033524:-:15583..18552

Molecular Weight (calculated)

72983.0 Da

IEP (calculated)

8.652

GRAVY (calculated)

-0.986

Length

641 amino acids

Sequence
(BLAST)

001: MPSLRSDSSI KLITYSEELV DGKPLYASSN SLPVKALNRE PAGHAFHSAA LKLHGCAEEP TDSEGDDKKA GGDDKEKEYV PSFNSYSNKG KKKSGTQQQD
101: HYALLGLSNL RYLATEDQIR KSYREAALKH HPDKLASLLL TEETEEAKEA KKEEIESRFK AIQEAYEVLM DPLKRRIFDS TDEFDDEVPT DCAPQDFFKV
201: FGPAFKRNAR WSVNQRIPDL GEENTKLKEV DRFYNFWYAF KSWREFPDEE EHDLEQADSR EERRWMEKEN ARATAKARKE EHARIRTLVD NAYRKDPRIV
301: KRKEEEKAEK QQKKDAKLMA KKKQEEEAAI AAAEEKRRKE EEEKRAVESA QQQKKAKEKE KKLIRKERNR LRTLSAPVVA QRLLDISQED IENLCMTLNI
401: EQLQSLCDKM GNKEGLELAK VIRDGCSDSS RDQEANSKEK ESEKTNGGGA ERVSVLESTQ KKQPWSKEEI DMLRKGMIKY PKGTSRRWEV ISEYIGTGRS
501: VEEILKATKT VLLQKPDSAK AFDSFLEKRK PTATIASPLS TREELGESLP ATAKVKPPVK ETVVVGQSSE SNGEASGSSV ETDGWSAVQE RALVQALKTF
601: PKETSQRWER VAAAVPGKTV IQCKKKFAEL KEIIRSKKTA V

Best Arabidopsis Sequence Match ( AT3G11450.1 )
(BLAST)

001: MPSRRSESAI RLITYSEELV DGKPFFAFSN CLPVKALNRE PAGHAFHSAA LKLHGCAEEP TDDEGGDKKV GDDKEKEYVP SFNSYANKGK KKSGTQQQDH
101: YALLGLSNLR YLATEDQIRK SYREAALKHH PDKLASLLLL EETEEAKEAK KDEIESRFKA IQEAYEVLMD PTRRRIFDST DEFDDEVPSD CLPQDFFKVF
201: GPAFKRNARW SVNQRIPDLG DENTPLKDVD KFYNFWYAFK SWREFPDEEE HDLEQADSRE ERRWMEKENA KKTVKARKEE HARIRTLVDN AYRKDPRIVK
301: RKEEEKAEKQ QKKDAKIQAK KKQEEDAAIA AEEEKRRKEE EEKRAAESAQ QQKKTKEREK KLLRKERNRL RTLSAPLVAQ RLLDISEEDI ENLCMSLNTE
401: QLQNLCDKMG NKEGLELAKV IKDGCNSSRN DEAESKEKVS KKTNGGTEPT TRVSQLDSST QKKQPWSKEE IDMLRKGMIK YPKGTSRRWE VISEYIGTGR
501: SVEEILKATK TVLLQKPDSA KAFDSFLEKR KPSASITSPL STREELGESL PTMTTTTNAK PSKETVVGKS SSSQSSDNNG EVGGSSDADS WSTVQERALV
601: QALKTFPKET SQRWERVAAA VPGKTMNQCK KKFAELKEII RNKKTGV

Arabidopsis Description

DnaJ and Myb-like DNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J6A8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.