CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025078.1-P	Field mustard	nucleus	89.26	88.96
CDY38980	Canola	nucleus	77.18	77.7
AT5G45420.2	Thale cress	nucleus	70.47	67.96
VIT_02s0012g00630.t01	Wine grape	nucleus	46.64	46.49
KRH59540	Soybean	endoplasmic reticulum, nucleus	47.99	45.25
Solyc08g077290.1.1	Tomato	unclear	45.64	42.63
PGSC0003DMT400062221	Potato	nucleus	45.3	42.32
TraesCS7B01G187400.1	Wheat	nucleus	39.26	37.62
TraesCS7A01G299800.1	Wheat	nucleus	39.26	37.62
HORVU7Hr1G070730.1	Barley	nucleus	39.26	37.62
TraesCS7D01G294900.1	Wheat	nucleus	38.93	37.42
Zm00001d024538_P001	Maize	plasma membrane	37.92	35.65
Os08t0159000-01	Rice	nucleus	38.26	35.08
KXG24493	Sorghum	nucleus, plastid	37.25	34.91
VIT_13s0106g00370.t01	Wine grape	nucleus	29.53	34.51
GSMUA_Achr1P06330_001	Banana	nucleus	24.5	28.85
CDX73875	Canola	nucleus	24.83	11.82
CDY53316	Canola	nucleus	25.5	11.6
CDY08525	Canola	nucleus	24.83	11.56
CDY56850	Canola	nucleus	24.5	11.39
CDY11583	Canola	plastid	9.4	9.18
CDY11348	Canola	nucleus	5.37	6.61
CDX80983	Canola	nucleus	8.39	6.56
CDY11351	Canola	nucleus	8.05	6.4
CDX80982	Canola	nucleus	8.39	5.92

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	GO:A0A078HPC1	UniProt:A0A078HPC1	EnsemblPlants:CDY39426	ProteinID:CDY39426
ProteinID:CDY39426.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00067888001	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:Myb-like_dom
PFscan:PS50090	PANTHER:PTHR43999	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TMHMM:TMhelix
UniParc:UPI0004EDD4B8	SEG:seg	:	:	:	:

Description

BnaAnng05570DBnaAnng05570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPC1]

Coordinates

chrLK032447:-:199054..199950

Molecular Weight (calculated)

33478.4 Da

IEP (calculated)

6.978

GRAVY (calculated)

-0.788

Length

298 amino acids

Sequence
(BLAST)

001: MEFYDEDKPR FVFQSRPSSS RRTTEEDEEE DHKAPKKIFV SISVVISLLS LSLSFFYFES EPAQSLLLWL AISFLVGPFA PPPLTGGKIR VGYGQILEPE
101: EIKEEHSTDN ERESRRNKRS SKVTKIEKPP ENPPPVKVDR SEIHGSVKEW SEEEIEILKK QLVKHPAGKP GRWEAVAAAF GGKYKTENVI KKAKEIGEKK
201: VYESDDYAQF LKNRKASSSS SDPRLGEEEE EDAGGDEETW SNGEDIALLN ALKAFPKEAA MRWEKVAAAV PGKKSKAACM KRVTELKKGF RSSKSGAN

Best Arabidopsis Sequence Match ( AT5G45420.3 )
(BLAST)

001: MDFFDEDRPR FVFQSRPSSS HTAEEEEEAR IPNKLFISIS VSISLIILSL SFFYFESEPA KSLLLWLSLS FLVGPFAPSS LTGGKIRVGY GQILEPEQIH
101: DESSTDNERE SRRKSVNKRS KGSTKSDNPP ENASAVTEVS RKVVIPQSKE SGSVNETKDW TAEEIEILKK QLIKHPAGKP GRWETVASAF GGRYKTENVI
201: KKAKEIGEKK IYESDDYAQF LKNRKASDPR LVDENEENSG AGGDAEGTKE IWSNGEDIAL LNALKAFPKE AAMRWEKIAA AVPGKSKAAC MKRVTELKKG
301: FRSSKTPAN

Arabidopsis Description

MAMYBTranscription factor MAMYB [Source:UniProtKB/Swiss-Prot;Acc:Q9ASQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.