Factsheet for Solyc08g077290.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

nucleus 4
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062221	Potato	nucleus	90.6	90.6
VIT_02s0012g00630.t01	Wine grape	nucleus	45.77	48.83
CDY38980	Canola	nucleus	42.95	46.28
KRH59540	Soybean	endoplasmic reticulum, nucleus	45.77	46.2
Bra025078.1-P	Field mustard	nucleus	43.26	46.15
CDY39426	Canola	nucleus	42.63	45.64
AT5G45420.2	Thale cress	nucleus	44.2	45.63
VIT_13s0106g00370.t01	Wine grape	nucleus	31.66	39.61
TraesCS7D01G294900.1	Wheat	nucleus	37.62	38.71
HORVU7Hr1G070730.1	Barley	nucleus	37.62	38.59
TraesCS7A01G299800.1	Wheat	nucleus	37.62	38.59
KXG24493	Sorghum	nucleus, plastid	38.24	38.36
TraesCS7B01G187400.1	Wheat	nucleus	37.3	38.26
Zm00001d024538_P001	Maize	plasma membrane	36.05	36.28
Os08t0159000-01	Rice	nucleus	36.36	35.69
GSMUA_Achr1P06330_001	Banana	nucleus	25.71	32.41
Solyc01g096700.2.1	Tomato	nucleus	24.76	12.95

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886
GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016049	GO:GO:0030154	GO:GO:0040007	GO:GO:0048767	InterPro:Homeobox-like_sf	InterPro:IPR017877
UniProt:K4CN89	InterPro:Myb-like_dom	PFscan:PS50090	PANTHER:PTHR43999	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	EnsemblPlantsGene:Solyc08g077290.1	EnsemblPlants:Solyc08g077290.1.1	TMHMM:TMhelix	UniParc:UPI000276C2A9	:

Description

No Description!

Coordinates

chr8:-:61198439..61199398

Molecular Weight (calculated)

35335.9 Da

IEP (calculated)

9.413

GRAVY (calculated)

-0.628

Length

319 amino acids

Sequence
(BLAST)

001: MEFLDEDAKP RFLFQSKPLQ QSNSDPETQT RSLYRPGIII SISLAVLFFA LSILYFSFEP FGSIFLWISL SLLVGPFAPS SVTGGDIRVG LGEPIQDLPK
101: DDLSDTEPDT KKSNRRSNRP TKKNVDFEPV LATNYDLKPE KTNGSVANSK NSNGSVANLE KKVGDGVWNE GDEELLRKMT GKHPVGKPGR WEAIADGFNG
201: RYKVESVIKK SKELGEKKMS DGDSYQRFLK DRKTVDKRAE GGNEADFENV EAKKAVESGW SSGEDLALLN ALKTFPKEVA MRWEKIAAAV PGKNKAACMK
301: RMAELKKDFR SSKSANAEA

Best Arabidopsis Sequence Match ( AT5G45420.3 )
(BLAST)

001: MDFFDEDRPR FVFQSRPSSS HTAEEEEEAR IPNKLFISIS VSISLIILSL SFFYFESEPA KSLLLWLSLS FLVGPFAPSS LTGGKIRVGY GQILEPEQIH
101: DESSTDNERE SRRKSVNKRS KGSTKSDNPP ENASAVTEVS RKVVIPQSKE SGSVNETKDW TAEEIEILKK QLIKHPAGKP GRWETVASAF GGRYKTENVI
201: KKAKEIGEKK IYESDDYAQF LKNRKASDPR LVDENEENSG AGGDAEGTKE IWSNGEDIAL LNALKAFPKE AAMRWEKIAA AVPGKSKAAC MKRVTELKKG
301: FRSSKTPAN

Arabidopsis Description

MAMYBTranscription factor MAMYB [Source:UniProtKB/Swiss-Prot;Acc:Q9ASQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.