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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY39426 Canola nucleus 77.7 77.18
AT5G45420.2 Thale cress nucleus 68.92 66.02
VIT_02s0012g00630.t01 Wine grape nucleus 47.97 47.49
KRH59540 Soybean endoplasmic reticulum, nucleus 48.99 45.89
Solyc08g077290.1.1 Tomato unclear 46.28 42.95
PGSC0003DMT400062221 Potato nucleus 45.27 42.01
TraesCS7A01G299800.1 Wheat nucleus 43.24 41.16
TraesCS7B01G187400.1 Wheat nucleus 42.91 40.84
HORVU7Hr1G070730.1 Barley nucleus 42.91 40.84
TraesCS7D01G294900.1 Wheat nucleus 42.57 40.65
Zm00001d024538_P001 Maize plasma membrane 41.22 38.49
Os08t0159000-01 Rice nucleus 42.23 38.46
KXG24493 Sorghum nucleus, plastid 40.2 37.42
VIT_13s0106g00370.t01 Wine grape nucleus 30.74 35.69
GSMUA_Achr1P06330_001 Banana nucleus 25.34 29.64
CDX73875 Canola nucleus 26.01 12.3
CDY08525 Canola nucleus 26.35 12.19
CDY56850 Canola nucleus 26.01 12.01
CDY53316 Canola nucleus 26.35 11.91
CDY11583 Canola plastid 10.81 10.49
CDY11348 Canola nucleus 6.42 7.85
CDY11351 Canola nucleus 9.46 7.47
CDX80983 Canola nucleus 9.46 7.35
CDX80982 Canola nucleus 9.46 6.64
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.2.2GO:A0A078HKF0UniProt:A0A078HKF0EnsemblPlants:CDY38980ProteinID:CDY38980
ProteinID:CDY38980.1GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488GO:GO:0005575
GO:GO:0016020GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00067041001InterPro:Homeobox-like_sfInterPro:IPR017877InterPro:Myb-like_dom
PFAM:PF00249PFscan:PS50090PANTHER:PTHR43999InterPro:SANT/MybSMART:SM00717SUPFAM:SSF46689
TMHMM:TMhelixUniParc:UPI0004EB3066SEG:seg:::
Description
BnaC07g18400DBnaC07g18400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKF0]
Coordinates
chrLK032436:+:150008..151150
Molecular Weight (calculated)
33308.4 Da
IEP (calculated)
9.368
GRAVY (calculated)
-0.829
Length
296 amino acids
Sequence
(BLAST)
001: MEFYDEDKPR FVFQSRPSSS RKTKEEEDHK TPNKIFISIS VVISLLTLSL SFFYFESEPT QSLLLWLAIS FLVGPFAPPS LTGGKIRVGY GQILEPEQLN
101: EEHSTDNERE SRRNKRSNKV MKNDKPPENP PPVKVDRSEI HGSVKETKEW SDEEIEVLKK QLVKHPAGKP GRWEAVAAAF GGKYKTENVI KKAKEIGEKK
201: VYESDDYAQF LKKRKASSDP RLGEEEEDAG KNGGDDETWS NGEDIALLNA LKAFPKEAAM RWEKVAAAVP GKSKAACMKR VTELKKGFRS SKSGAN
Best Arabidopsis Sequence Match ( AT5G45420.3 )
(BLAST)
001: MDFFDEDRPR FVFQSRPSSS HTAEEEEEAR IPNKLFISIS VSISLIILSL SFFYFESEPA KSLLLWLSLS FLVGPFAPSS LTGGKIRVGY GQILEPEQIH
101: DESSTDNERE SRRKSVNKRS KGSTKSDNPP ENASAVTEVS RKVVIPQSKE SGSVNETKDW TAEEIEILKK QLIKHPAGKP GRWETVASAF GGRYKTENVI
201: KKAKEIGEKK IYESDDYAQF LKNRKASDPR LVDENEENSG AGGDAEGTKE IWSNGEDIAL LNALKAFPKE AAMRWEKIAA AVPGKSKAAC MKRVTELKKG
301: FRSSKTPAN
Arabidopsis Description
MAMYBTranscription factor MAMYB [Source:UniProtKB/Swiss-Prot;Acc:Q9ASQ2]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.