Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY39426 | Canola | nucleus | 77.7 | 77.18 |
AT5G45420.2 | Thale cress | nucleus | 68.92 | 66.02 |
VIT_02s0012g00630.t01 | Wine grape | nucleus | 47.97 | 47.49 |
KRH59540 | Soybean | endoplasmic reticulum, nucleus | 48.99 | 45.89 |
Solyc08g077290.1.1 | Tomato | unclear | 46.28 | 42.95 |
PGSC0003DMT400062221 | Potato | nucleus | 45.27 | 42.01 |
TraesCS7A01G299800.1 | Wheat | nucleus | 43.24 | 41.16 |
TraesCS7B01G187400.1 | Wheat | nucleus | 42.91 | 40.84 |
HORVU7Hr1G070730.1 | Barley | nucleus | 42.91 | 40.84 |
TraesCS7D01G294900.1 | Wheat | nucleus | 42.57 | 40.65 |
Zm00001d024538_P001 | Maize | plasma membrane | 41.22 | 38.49 |
Os08t0159000-01 | Rice | nucleus | 42.23 | 38.46 |
KXG24493 | Sorghum | nucleus, plastid | 40.2 | 37.42 |
VIT_13s0106g00370.t01 | Wine grape | nucleus | 30.74 | 35.69 |
GSMUA_Achr1P06330_001 | Banana | nucleus | 25.34 | 29.64 |
CDX73875 | Canola | nucleus | 26.01 | 12.3 |
CDY08525 | Canola | nucleus | 26.35 | 12.19 |
CDY56850 | Canola | nucleus | 26.01 | 12.01 |
CDY53316 | Canola | nucleus | 26.35 | 11.91 |
CDY11583 | Canola | plastid | 10.81 | 10.49 |
CDY11348 | Canola | nucleus | 6.42 | 7.85 |
CDY11351 | Canola | nucleus | 9.46 | 7.47 |
CDX80983 | Canola | nucleus | 9.46 | 7.35 |
CDX80982 | Canola | nucleus | 9.46 | 6.64 |
Protein Annotations
Gene3D:1.10.10.60 | MapMan:15.5.2.2 | GO:A0A078HKF0 | UniProt:A0A078HKF0 | EnsemblPlants:CDY38980 | ProteinID:CDY38980 |
ProteinID:CDY38980.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00067041001 | InterPro:Homeobox-like_sf | InterPro:IPR017877 | InterPro:Myb-like_dom |
PFAM:PF00249 | PFscan:PS50090 | PANTHER:PTHR43999 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
TMHMM:TMhelix | UniParc:UPI0004EB3066 | SEG:seg | : | : | : |
Description
BnaC07g18400DBnaC07g18400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKF0]
Coordinates
chrLK032436:+:150008..151150
Molecular Weight (calculated)
33308.4 Da
IEP (calculated)
9.368
GRAVY (calculated)
-0.829
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFYDEDKPR FVFQSRPSSS RKTKEEEDHK TPNKIFISIS VVISLLTLSL SFFYFESEPT QSLLLWLAIS FLVGPFAPPS LTGGKIRVGY GQILEPEQLN
101: EEHSTDNERE SRRNKRSNKV MKNDKPPENP PPVKVDRSEI HGSVKETKEW SDEEIEVLKK QLVKHPAGKP GRWEAVAAAF GGKYKTENVI KKAKEIGEKK
201: VYESDDYAQF LKKRKASSDP RLGEEEEDAG KNGGDDETWS NGEDIALLNA LKAFPKEAAM RWEKVAAAVP GKSKAACMKR VTELKKGFRS SKSGAN
101: EEHSTDNERE SRRNKRSNKV MKNDKPPENP PPVKVDRSEI HGSVKETKEW SDEEIEVLKK QLVKHPAGKP GRWEAVAAAF GGKYKTENVI KKAKEIGEKK
201: VYESDDYAQF LKKRKASSDP RLGEEEEDAG KNGGDDETWS NGEDIALLNA LKAFPKEAAM RWEKVAAAVP GKSKAACMKR VTELKKGFRS SKSGAN
001: MDFFDEDRPR FVFQSRPSSS HTAEEEEEAR IPNKLFISIS VSISLIILSL SFFYFESEPA KSLLLWLSLS FLVGPFAPSS LTGGKIRVGY GQILEPEQIH
101: DESSTDNERE SRRKSVNKRS KGSTKSDNPP ENASAVTEVS RKVVIPQSKE SGSVNETKDW TAEEIEILKK QLIKHPAGKP GRWETVASAF GGRYKTENVI
201: KKAKEIGEKK IYESDDYAQF LKNRKASDPR LVDENEENSG AGGDAEGTKE IWSNGEDIAL LNALKAFPKE AAMRWEKIAA AVPGKSKAAC MKRVTELKKG
301: FRSSKTPAN
101: DESSTDNERE SRRKSVNKRS KGSTKSDNPP ENASAVTEVS RKVVIPQSKE SGSVNETKDW TAEEIEILKK QLIKHPAGKP GRWETVASAF GGRYKTENVI
201: KKAKEIGEKK IYESDDYAQF LKNRKASDPR LVDENEENSG AGGDAEGTKE IWSNGEDIAL LNALKAFPKE AAMRWEKIAA AVPGKSKAAC MKRVTELKKG
301: FRSSKTPAN
Arabidopsis Description
MAMYBTranscription factor MAMYB [Source:UniProtKB/Swiss-Prot;Acc:Q9ASQ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.