Factsheet for VIT_02s0012g00630.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	vacuole
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0106g00370.t01	Wine grape	nucleus	53.85	63.14
KRH59540	Soybean	endoplasmic reticulum, nucleus	53.51	50.63
AT5G45420.2	Thale cress	nucleus	50.17	48.54
CDY38980	Canola	nucleus	47.49	47.97
PGSC0003DMT400062221	Potato	nucleus	50.84	47.65
Bra025078.1-P	Field mustard	nucleus	47.16	47.16
CDY39426	Canola	nucleus	46.49	46.64
Solyc08g077290.1.1	Tomato	unclear	48.83	45.77
KXG24493	Sorghum	nucleus, plastid	39.46	37.11
TraesCS7A01G299800.1	Wheat	nucleus	37.79	36.33
TraesCS7D01G294900.1	Wheat	nucleus	37.46	36.13
TraesCS7B01G187400.1	Wheat	nucleus	37.46	36.01
GSMUA_Achr1P06330_001	Banana	nucleus	30.43	35.97
Zm00001d024538_P001	Maize	plasma membrane	37.79	35.65
Os08t0159000-01	Rice	nucleus	38.46	35.38
HORVU7Hr1G070730.1	Barley	nucleus	36.79	35.37
VIT_01s0011g00790.t01	Wine grape	nucleus	24.75	11.4

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100255727	wikigene:100255727	MapMan:15.5.2.2	ProteinID:CCB57935	ProteinID:CCB57935.1
UniProt:F6HTC5	EMBL:FN596247	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016020	GO:GO:0016021
InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:IPR017884	EntrezGene:LOC100255727	wikigene:LOC100255727	InterPro:Myb-like_dom
PFAM:PF00249	PFscan:PS50090	PFscan:PS51293	PANTHER:PTHR43999	InterPro:SANT/Myb	InterPro:SANT_dom
SMART:SM00717	SUPFAM:SSF46689	TMHMM:TMhelix	UniParc:UPI0001982C74	ArrayExpress:VIT_02s0012g00630	EnsemblPlantsGene:VIT_02s0012g00630
EnsemblPlants:VIT_02s0012g00630.t01	unigene:Vvi.24109	RefSeq:XP_002279131	RefSeq:XP_002279131.1	SEG:seg	:

Description

No Description!

Coordinates

chr2:-:6527103..6528238

Molecular Weight (calculated)

33334.8 Da

IEP (calculated)

9.776

GRAVY (calculated)

-0.510

Length

299 amino acids

Sequence
(BLAST)

001: MEFLDEESRP RFVFQSGSNH SPASTHLHPQ PLNKPLIFIS LSLSSILISL SVFFLQSEPL KSLLLWFALS LLVGPFAPSH LTAGDIRVGR GPILEFPSQE
101: KDSDELNKRP PSNRRPRLRK VETATFTSPV ATSVEGDNGL ARVEKRSEAT AEESEWVDGD VEILKKQLLK HPVGMPGRWE AVAEAFRGRH GVESVIRKAK
201: SLGERKSSDS DSFNRFLKDR KPVDKRVEDG MAMENDEKEG WSSGEDIALL NALKAFPKDV PMRWEKIAAA VPGRSKAACM KRFSELKKGF RNSKAAAEE

Best Arabidopsis Sequence Match ( AT5G45420.3 )
(BLAST)

001: MDFFDEDRPR FVFQSRPSSS HTAEEEEEAR IPNKLFISIS VSISLIILSL SFFYFESEPA KSLLLWLSLS FLVGPFAPSS LTGGKIRVGY GQILEPEQIH
101: DESSTDNERE SRRKSVNKRS KGSTKSDNPP ENASAVTEVS RKVVIPQSKE SGSVNETKDW TAEEIEILKK QLIKHPAGKP GRWETVASAF GGRYKTENVI
201: KKAKEIGEKK IYESDDYAQF LKNRKASDPR LVDENEENSG AGGDAEGTKE IWSNGEDIAL LNALKAFPKE AAMRWEKIAA AVPGKSKAAC MKRVTELKKG
301: FRSSKTPAN

Arabidopsis Description

MAMYBTranscription factor MAMYB [Source:UniProtKB/Swiss-Prot;Acc:Q9ASQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.