Factsheet for VIT_01s0011g00790.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
mitochondrion 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26350	Soybean	nucleus	73.19	74.69
KRH44087	Soybean	nucleus	72.57	73.94
PGSC0003DMT400008515	Potato	nucleus	71.03	70.92
Solyc01g096700.2.1	Tomato	nucleus	65.64	69.84
GSMUA_Achr2P05590_001	Banana	nucleus	61.17	67.63
CDY56850	Canola	nucleus	64.25	65.05
AT3G11450.1	Thale cress	nucleus	64.41	64.61
Bra034841.1-P	Field mustard	nucleus	63.02	63.91
CDY08525	Canola	nucleus	62.71	63.59
OQU92158	Sorghum	nucleus	63.48	63.0
Zm00001d004033_P001	Maize	nucleus	63.33	62.94
KXG26091	Sorghum	nucleus	63.33	62.94
Zm00001d004025_P001	Maize	nucleus	62.87	62.48
HORVU1Hr1G091820.1	Barley	nucleus	62.56	60.87
AT5G06110.1	Thale cress	nucleus	61.63	60.33
CDY11348	Canola	nucleus	22.5	60.33
TraesCS1A01G420500.1	Wheat	cytosol	61.02	59.82
TraesCS1B01G451500.1	Wheat	cytosol	61.02	59.82
Bra005877.1-P	Field mustard	nucleus, plastid	41.76	59.17
TraesCS1D01G428400.1	Wheat	nucleus	61.17	59.08
CDX80982	Canola	nucleus	37.6	57.82
CDX73875	Canola	nucleus	55.47	57.51
Bra005875.1-P	Field mustard	nucleus	42.06	57.35
Bra001404.1-P	Field mustard	nucleus	55.32	55.83
CDY53316	Canola	nucleus	56.09	55.57
CDY11351	Canola	nucleus	31.9	55.2
CDX80983	Canola	nucleus	32.2	54.86
Zm00001d047099_P001	Maize	nucleus	28.04	53.37
Bra008278.1-P	Field mustard	nucleus	17.72	50.66
Os04t0377932-00	Rice	nucleus	19.72	48.12
CDY11583	Canola	plastid	20.8	44.26
Zm00001d047097_P001	Maize	nucleus	24.81	40.76
VIT_02s0012g00630.t01	Wine grape	nucleus	11.4	24.75
VIT_13s0106g00370.t01	Wine grape	nucleus	8.78	22.35

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.287.110	EntrezGene:100259545	wikigene:100259545	MapMan:19.1.2.3	EMBL:AM480588
ProteinID:CAN64160	ProteinID:CAN64160.1	ProteinID:CCB51059	ProteinID:CCB51059.1	ncoils:Coil	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	UniProt:F6HF72	EMBL:FN595752	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR001623	InterPro:IPR017877	InterPro:IPR036869	InterPro:J_dom_sf
EntrezGene:LOC100259545	wikigene:LOC100259545	InterPro:Myb-like_dom	PFAM:PF00226	PFAM:PF00249	PRINTS:PR00625
ScanProsite:PS00636	PFscan:PS50076	PFscan:PS50090	PANTHER:PTHR43999	InterPro:SANT/Myb	SMART:SM00271
SMART:SM00717	SUPFAM:SSF46565	SUPFAM:SSF46689	UniParc:UPI00015C8023	ArrayExpress:VIT_01s0011g00790	EnsemblPlantsGene:VIT_01s0011g00790
EnsemblPlants:VIT_01s0011g00790.t01	unigene:Vvi.257	RefSeq:XP_002274720	RefSeq:XP_002274720.2	RefSeq:XP_010649490.1	SEG:seg

Description

No Description!

Coordinates

chr1:-:710539..714104

Molecular Weight (calculated)

74487.4 Da

IEP (calculated)

8.182

GRAVY (calculated)

-1.027

Length

649 amino acids

Sequence
(BLAST)

001: MSANMSLRLI TYSEELVNGQ PIYVSSNCLP LKAFRLEPAG HAFHSAALRV LGCCEEEGED EDDQNVPNDK EQSYFPSSGS YSSKGKKKSG AEGKQQDHYA
101: LLGLSHLRFL ATEDQIRKSY RETALKHHPD KQAALILAEE TEAAKQAKKD EIENHFKSIQ EAYEVLIDPV KRRIYDSTDE FDDEIPTDCE PQDFFKVFGP
201: AFMRNSRWSV NQPVPTLGEE NTPLKEVDMF YNFWYCFKSW REFPHTDEFD LEQAESRDHK RWMERQNAKL SEKARKEEYV RIRSLIDNAY KRDPRILRRK
301: EEERAEKQKK RQAKYLAKKL QEEEAARIAE EERRQKEEEE KRAAEAASHQ KKVKEKEKKL LRKERTRLRT LSAPVLTQNL FNITEDDVES LCMSLETEQL
401: RNLCDKIEGA EGLERGKLLR DARGGNTDST GKKQGEKNPQ QNGSVEVNGN VPLGKYEKKE KPWEREEIEL LRKGMQKYPK GTSRRWEVIS EYIGTGRSVD
501: EILKATKTVL LQKPDATKAF DSFLEKRKPA QSIASPLTTR EETEGVLIQN GPESNASNKD NLKESSSTSG KQQNPDGAVA SNGVTSSSEQ DLWSAVQERA
601: LVQALKTFPK ETNQRWERVA AAVPGKTVNQ CKKKFALLKE HFRNKKNAV

Best Arabidopsis Sequence Match ( AT3G11450.1 )
(BLAST)

001: MPSRRSESAI RLITYSEELV DGKPFFAFSN CLPVKALNRE PAGHAFHSAA LKLHGCAEEP TDDEGGDKKV GDDKEKEYVP SFNSYANKGK KKSGTQQQDH
101: YALLGLSNLR YLATEDQIRK SYREAALKHH PDKLASLLLL EETEEAKEAK KDEIESRFKA IQEAYEVLMD PTRRRIFDST DEFDDEVPSD CLPQDFFKVF
201: GPAFKRNARW SVNQRIPDLG DENTPLKDVD KFYNFWYAFK SWREFPDEEE HDLEQADSRE ERRWMEKENA KKTVKARKEE HARIRTLVDN AYRKDPRIVK
301: RKEEEKAEKQ QKKDAKIQAK KKQEEDAAIA AEEEKRRKEE EEKRAAESAQ QQKKTKEREK KLLRKERNRL RTLSAPLVAQ RLLDISEEDI ENLCMSLNTE
401: QLQNLCDKMG NKEGLELAKV IKDGCNSSRN DEAESKEKVS KKTNGGTEPT TRVSQLDSST QKKQPWSKEE IDMLRKGMIK YPKGTSRRWE VISEYIGTGR
501: SVEEILKATK TVLLQKPDSA KAFDSFLEKR KPSASITSPL STREELGESL PTMTTTTNAK PSKETVVGKS SSSQSSDNNG EVGGSSDADS WSTVQERALV
601: QALKTFPKET SQRWERVAAA VPGKTMNQCK KKFAELKEII RNKKTGV

Arabidopsis Description

DnaJ and Myb-like DNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J6A8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.