CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26091	Sorghum	nucleus	92.97	93.11
Zm00001d047099_P001	Maize	nucleus	44.04	84.46
HORVU1Hr1G091820.1	Barley	nucleus	79.51	77.96
TraesCS1A01G420500.1	Wheat	cytosol	77.98	77.04
TraesCS1B01G451500.1	Wheat	cytosol	77.37	76.44
TraesCS1D01G428400.1	Wheat	nucleus	78.44	76.34
KRH44087	Soybean	nucleus	64.98	66.72
KRH26350	Soybean	nucleus	64.83	66.67
Zm00001d047097_P001	Maize	nucleus	40.06	66.33
GSMUA_Achr2P05590_001	Banana	nucleus	57.8	64.4
PGSC0003DMT400008515	Potato	nucleus	63.15	63.54
VIT_01s0011g00790.t01	Wine grape	nucleus	63.0	63.48
Bra034841.1-P	Field mustard	nucleus	60.86	62.19
CDY08525	Canola	nucleus	60.7	62.03
Solyc01g096700.2.1	Tomato	nucleus	57.8	61.97
CDY11348	Canola	nucleus	22.63	61.16
CDY56850	Canola	nucleus	59.33	60.53
AT3G11450.1	Thale cress	nucleus	59.33	59.97
Bra005877.1-P	Field mustard	nucleus, plastid	41.28	58.95
Bra005875.1-P	Field mustard	nucleus	41.44	56.93
CDX80982	Canola	nucleus	36.7	56.87
CDY11351	Canola	nucleus	32.57	56.8
Os04t0377932-00	Rice	nucleus	23.09	56.77
AT5G06110.1	Thale cress	nucleus	57.03	56.26
CDX80983	Canola	nucleus	32.72	56.17
CDX73875	Canola	nucleus	51.68	53.99
Bra008278.1-P	Field mustard	nucleus	18.2	52.42
Bra001404.1-P	Field mustard	nucleus	51.53	52.41
CDY53316	Canola	nucleus	51.99	51.91
CDY11583	Canola	plastid	20.49	43.93
KXG24493	Sorghum	nucleus, plastid	12.39	25.47

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.287.110	MapMan:19.1.2.3	UniProt:C5WSF7	ncoils:Coil	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	ProteinID:EER94505.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
InterPro:Homeobox-like_sf	InterPro:IPR001623	InterPro:IPR017877	InterPro:IPR036869	InterPro:J_dom_sf	InterPro:Myb-like_dom
EnsemblPlants:OQU92158	ProteinID:OQU92158	ProteinID:OQU92158.1	PFAM:PF00226	PFAM:PF00249	PRINTS:PR00625
ScanProsite:PS00636	PFscan:PS50076	PFscan:PS50090	PANTHER:PTHR43999	InterPro:SANT/Myb	SMART:SM00271
SMART:SM00717	EnsemblPlantsGene:SORBI_3001G301700	SUPFAM:SSF46565	SUPFAM:SSF46689	UniParc:UPI00081ADEC8	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:58369544..58373456

Molecular Weight (calculated)

73473.1 Da

IEP (calculated)

8.488

GRAVY (calculated)

-0.888

Length

654 amino acids

Sequence
(BLAST)

001: MESQKSCLLI TYSHEIVDGV PLYVSSNCLP IKALKYEPAG HSFHAAAMKL LGLGQHEDIE TDDRSVSSDD KSQDFNTASD TFSSKGKKKS SGSQQQDHYA
101: LLGLGHLRFL ATEDQIRKSY RDMALKHHPD KQAALILAET TEEAKQAKKD EIESHFKAIQ EAYEVLIDPT KRRIYDSTDE FDDDVPTDCA PQDFFKVFGP
201: AFMRNGRWSV TQPIPSLGDD STAVEEVDKF YNFWYNFKSW REFPDDDEYD LEQAESREHK RWMERQNAKL QEKAKKAEYA RVRTLVDNAY KKDPRIQRRK
301: EEEKAEKQRR KEAKYLAKKL QEEEAARAAE EERIRKEEET KKAAEAAQHQ KKLKEKEKKL LRKEKTRLRT LAAPVVADSH FGMSEEDVES TCAKLDMEQL
401: KKLCDGMDGK DAAEKARLMS SALRNESSSK EVKKVEANGV GSSAPKSNST GGRVTEGSSS ILNSYEKKER PWAKEEVEML RKAMQKYPKG TSRRWEVVSE
501: FIGTNRSVEE ILKATKSVLL QKPDSSKAFD SFLEKRKPAQ SIASPLSTRD EVSSSTEGAG TASSKAAVQA VSSQTANGKA AADPVPDGAP SVADPDAWTE
601: AQVLALVQAL KAFPKDASQR WERVAAAVPG KTVVQCKKKV AAMRENFRSK KTGE

Best Arabidopsis Sequence Match ( AT3G11450.1 )
(BLAST)

001: MPSRRSESAI RLITYSEELV DGKPFFAFSN CLPVKALNRE PAGHAFHSAA LKLHGCAEEP TDDEGGDKKV GDDKEKEYVP SFNSYANKGK KKSGTQQQDH
101: YALLGLSNLR YLATEDQIRK SYREAALKHH PDKLASLLLL EETEEAKEAK KDEIESRFKA IQEAYEVLMD PTRRRIFDST DEFDDEVPSD CLPQDFFKVF
201: GPAFKRNARW SVNQRIPDLG DENTPLKDVD KFYNFWYAFK SWREFPDEEE HDLEQADSRE ERRWMEKENA KKTVKARKEE HARIRTLVDN AYRKDPRIVK
301: RKEEEKAEKQ QKKDAKIQAK KKQEEDAAIA AEEEKRRKEE EEKRAAESAQ QQKKTKEREK KLLRKERNRL RTLSAPLVAQ RLLDISEEDI ENLCMSLNTE
401: QLQNLCDKMG NKEGLELAKV IKDGCNSSRN DEAESKEKVS KKTNGGTEPT TRVSQLDSST QKKQPWSKEE IDMLRKGMIK YPKGTSRRWE VISEYIGTGR
501: SVEEILKATK TVLLQKPDSA KAFDSFLEKR KPSASITSPL STREELGESL PTMTTTTNAK PSKETVVGKS SSSQSSDNNG EVGGSSDADS WSTVQERALV
601: QALKTFPKET SQRWERVAAA VPGKTMNQCK KKFAELKEII RNKKTGV

Arabidopsis Description

DnaJ and Myb-like DNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J6A8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.