CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	vacuole
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024538_P001	Maize	plasma membrane	88.99	89.27
TraesCS7A01G299800.1	Wheat	nucleus	66.35	67.85
TraesCS7D01G294900.1	Wheat	nucleus	65.72	67.42
HORVU7Hr1G070730.1	Barley	nucleus	65.09	66.56
TraesCS7B01G187400.1	Wheat	nucleus	64.78	66.24
Os08t0159000-01	Rice	nucleus	67.61	66.15
CDY38980	Canola	nucleus	37.42	40.2
VIT_02s0012g00630.t01	Wine grape	nucleus	37.11	39.46
Solyc08g077290.1.1	Tomato	unclear	38.36	38.24
KRH59540	Soybean	endoplasmic reticulum, nucleus	37.42	37.66
PGSC0003DMT400062221	Potato	nucleus	37.74	37.62
CDY39426	Canola	nucleus	34.91	37.25
GSMUA_Achr1P06330_001	Banana	nucleus	29.56	37.15
AT5G45420.2	Thale cress	nucleus	34.91	35.92
Bra025078.1-P	Field mustard	nucleus	33.65	35.79
VIT_13s0106g00370.t01	Wine grape	nucleus	25.47	31.76
KXG26091	Sorghum	nucleus	25.47	12.4
OQU92158	Sorghum	nucleus	25.47	12.39

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	EntrezGene:8080849	UniProt:C5YHC8	ProteinID:EES13396.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0007275	GO:GO:0008150	GO:GO:0009653
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016049	GO:GO:0030154	GO:GO:0040007
GO:GO:0048767	InterPro:Homeobox-like_sf	InterPro:IPR017877	EnsemblPlants:KXG24493	ProteinID:KXG24493	ProteinID:KXG24493.1
InterPro:Myb-like_dom	ProteinID:OQU79947.1	PFAM:PF00249	PFscan:PS50090	PANTHER:PTHR43999	InterPro:SANT/Myb
SMART:SM00717	EnsemblPlantsGene:SORBI_3007G049900	SUPFAM:SSF46689	TMHMM:TMhelix	UniParc:UPI0001A87432	RefSeq:XP_002443901.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:5019495..5023657

Molecular Weight (calculated)

33476.4 Da

IEP (calculated)

9.473

GRAVY (calculated)

-0.380

Length

318 amino acids

Sequence
(BLAST)

001: MEFIDPWDSQ TRARVVHSGA NSTSFSSTTT AKAPLSLPHA ASCAAAAVAL LAAAYYLPAA YQILSSLLIW IASSLLLAPF APSWATGGDI SVGRGRVVPA
101: PEPAPEPVSE PTPAPRRGRR QNPAPTPTKP SDPVTPPVQS AASLHPLQKA TAAGGAVVDG GEREEDAGEW TDQDLELLRR QMVKHPAGEP QRWEKIAAVF
201: GGRRTPESVI RAAKSGAPAA GGSSFDQFLR KRKPLDPRAE AADIGDNAGG AESADAAWTA GDDRALLNAL KEFPKDTAMR WEKVAASVPG KTKAACMKRV
301: TELKRDFRST KTASETAS

Best Arabidopsis Sequence Match ( AT5G45420.3 )
(BLAST)

001: MDFFDEDRPR FVFQSRPSSS HTAEEEEEAR IPNKLFISIS VSISLIILSL SFFYFESEPA KSLLLWLSLS FLVGPFAPSS LTGGKIRVGY GQILEPEQIH
101: DESSTDNERE SRRKSVNKRS KGSTKSDNPP ENASAVTEVS RKVVIPQSKE SGSVNETKDW TAEEIEILKK QLIKHPAGKP GRWETVASAF GGRYKTENVI
201: KKAKEIGEKK IYESDDYAQF LKNRKASDPR LVDENEENSG AGGDAEGTKE IWSNGEDIAL LNALKAFPKE AAMRWEKIAA AVPGKSKAAC MKRVTELKKG
301: FRSSKTPAN

Arabidopsis Description

MAMYBTranscription factor MAMYB [Source:UniProtKB/Swiss-Prot;Acc:Q9ASQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.