CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0012g00630.t01	Wine grape	nucleus	50.63	53.51
CDY38980	Canola	nucleus	45.89	48.99
Bra025078.1-P	Field mustard	nucleus	45.57	48.16
CDY39426	Canola	nucleus	45.25	47.99
AT5G45420.2	Thale cress	nucleus	45.89	46.93
PGSC0003DMT400062221	Potato	nucleus	46.52	46.08
Solyc08g077290.1.1	Tomato	unclear	46.2	45.77
VIT_13s0106g00370.t01	Wine grape	nucleus	31.65	39.22
TraesCS7B01G187400.1	Wheat	nucleus	37.66	38.26
TraesCS7D01G294900.1	Wheat	nucleus	37.34	38.06
HORVU7Hr1G070730.1	Barley	nucleus	37.34	37.94
TraesCS7A01G299800.1	Wheat	nucleus	37.34	37.94
KXG24493	Sorghum	nucleus, plastid	37.66	37.42
Zm00001d024538_P001	Maize	plasma membrane	37.03	36.91
GSMUA_Achr1P06330_001	Banana	nucleus	29.11	36.36
Os08t0159000-01	Rice	nucleus	37.03	36.0
KRH44087	Soybean	nucleus	25.95	12.87
KRH26350	Soybean	nucleus	25.63	12.74

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100780658	MapMan:15.5.2.2	UniProt:A0A0R0K5W0	EMBL:ACUP02003329	EnsemblPlantsGene:GLYMA_05G189200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0007275	GO:GO:0008150
GO:GO:0009653	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016049	GO:GO:0030154
GO:GO:0040007	GO:GO:0048767	InterPro:Homeobox-like_sf	InterPro:IPR017877	EnsemblPlants:KRH59540	ProteinID:KRH59540
ProteinID:KRH59540.1	InterPro:Myb-like_dom	PFAM:PF00249	PFscan:PS50090	PANTHER:PTHR43999	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	TMHMM:TMhelix	UniParc:UPI00023C4DE6	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:-:37499411..37501295

Molecular Weight (calculated)

34691.4 Da

IEP (calculated)

9.419

GRAVY (calculated)

-0.380

Length

316 amino acids

Sequence
(BLAST)

001: MFVGVSVSSV CERMEFLDED ARPRFVFQSG AAARSSEPPH PIHKPTKPFL FATVSLSSLF LTLSLFFLEA EPFKSLLFWL ALSLLVGPFA PPSITGGDVR
101: VGRGEVVNFP DPEPEPDEDA SRKSSQRRSR QRRAEEASAA VGPVVSVSAA EKRKESSGIE KRATVVEEEK GWSEEDVEVL KKQMVKNPVG KPGRWEAIAA
201: AFGGRHGVDS VIKKAKELGE KRVDDSESYA LFLKKRKALD KRVVEENADE GEKVVDNGWS SAEDIALLNA LKAFPKEVSM RWEKVAAAVP GRSKAACMKR
301: FAELKKGFRT AKAAAE

Best Arabidopsis Sequence Match ( AT5G45420.3 )
(BLAST)

001: MDFFDEDRPR FVFQSRPSSS HTAEEEEEAR IPNKLFISIS VSISLIILSL SFFYFESEPA KSLLLWLSLS FLVGPFAPSS LTGGKIRVGY GQILEPEQIH
101: DESSTDNERE SRRKSVNKRS KGSTKSDNPP ENASAVTEVS RKVVIPQSKE SGSVNETKDW TAEEIEILKK QLIKHPAGKP GRWETVASAF GGRYKTENVI
201: KKAKEIGEKK IYESDDYAQF LKNRKASDPR LVDENEENSG AGGDAEGTKE IWSNGEDIAL LNALKAFPKE AAMRWEKIAA AVPGKSKAAC MKRVTELKKG
301: FRSSKTPAN

Arabidopsis Description

MAMYBTranscription factor MAMYB [Source:UniProtKB/Swiss-Prot;Acc:Q9ASQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.