Factsheet for AT5G45420.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39426	Canola	nucleus	67.96	70.47
Bra025078.1-P	Field mustard	nucleus	67.64	69.9
CDY38980	Canola	nucleus	66.02	68.92
VIT_02s0012g00630.t01	Wine grape	nucleus	48.54	50.17
KRH59540	Soybean	endoplasmic reticulum, nucleus	46.93	45.89
Solyc08g077290.1.1	Tomato	unclear	45.63	44.2
PGSC0003DMT400062221	Potato	nucleus	44.34	42.95
TraesCS7A01G299800.1	Wheat	nucleus	38.51	38.26
TraesCS7D01G294900.1	Wheat	nucleus	38.19	38.06
HORVU7Hr1G070730.1	Barley	nucleus	37.86	37.62
TraesCS7B01G187400.1	Wheat	nucleus	37.86	37.62
VIT_13s0106g00370.t01	Wine grape	nucleus	30.42	36.86
Os08t0159000-01	Rice	nucleus	38.19	36.31
Zm00001d024538_P001	Maize	plasma membrane	36.57	35.65
KXG24493	Sorghum	nucleus, plastid	35.92	34.91
GSMUA_Achr1P06330_001	Banana	nucleus	25.89	31.62
AT3G11450.1	Thale cress	nucleus	23.95	11.44
AT5G06110.1	Thale cress	nucleus	23.3	10.86

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	EntrezGene:834578	ProteinID:AED95248.1	EMBL:AF367345	EMBL:AK117467
ProteinID:ANM69818.1	ProteinID:ANM69819.1	ArrayExpress:AT5G45420	EnsemblPlantsGene:AT5G45420	RefSeq:AT5G45420	TAIR:AT5G45420
RefSeq:AT5G45420-TAIR-G	EnsemblPlants:AT5G45420.2	EMBL:AY074839	Unigene:At.25208	ProteinID:BAB09170.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005886	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009653	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016049	GO:GO:0030154
GO:GO:0040007	GO:GO:0048767	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:Myb-like_dom	RefSeq:NP_001331471.1
RefSeq:NP_001331472.1	RefSeq:NP_568645.1	PFscan:PS50090	PANTHER:PTHR43999	UniProt:Q9ASQ2	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	TMHMM:TMhelix	UniParc:UPI00000AC4AA	SEG:seg	:

Description

MAMYBTranscription factor MAMYB [Source:UniProtKB/Swiss-Prot;Acc:Q9ASQ2]

Coordinates

chr5:-:18404069..18406654

Molecular Weight (calculated)

34364.5 Da

IEP (calculated)

8.873

GRAVY (calculated)

-0.662

Length

309 amino acids

Sequence
(BLAST)

001: MDFFDEDRPR FVFQSRPSSS HTAEEEEEAR IPNKLFISIS VSISLIILSL SFFYFESEPA KSLLLWLSLS FLVGPFAPSS LTGGKIRVGY GQILEPEQIH
101: DESSTDNERE SRRKSVNKRS KGSTKSDNPP ENASAVTEVS RKVVIPQSKE SGSVNETKDW TAEEIEILKK QLIKHPAGKP GRWETVASAF GGRYKTENVI
201: KKAKEIGEKK IYESDDYAQF LKNRKASDPR LVDENEENSG AGGDAEGTKE IWSNGEDIAL LNALKAFPKE AAMRWEKIAA AVPGKSKAAC MKRVTELKKG
301: FRSSKTPAN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.