Factsheet for Bra025078.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39426	Canola	nucleus	88.96	89.26
AT5G45420.2	Thale cress	nucleus	69.9	67.64
VIT_02s0012g00630.t01	Wine grape	nucleus	47.16	47.16
KRH59540	Soybean	endoplasmic reticulum, nucleus	48.16	45.57
Solyc08g077290.1.1	Tomato	unclear	46.15	43.26
PGSC0003DMT400062221	Potato	nucleus	45.48	42.63
TraesCS7D01G294900.1	Wheat	nucleus	39.46	38.06
TraesCS7B01G187400.1	Wheat	nucleus	39.46	37.94
TraesCS7A01G299800.1	Wheat	nucleus	39.46	37.94
HORVU7Hr1G070730.1	Barley	nucleus	39.46	37.94
Os08t0159000-01	Rice	nucleus	38.8	35.69
VIT_13s0106g00370.t01	Wine grape	nucleus	30.1	35.29
Zm00001d024538_P001	Maize	plasma membrane	36.79	34.7
KXG24493	Sorghum	nucleus, plastid	35.79	33.65
GSMUA_Achr1P06330_001	Banana	nucleus	24.41	28.85
Bra001404.1-P	Field mustard	nucleus	24.41	11.35
Bra034841.1-P	Field mustard	nucleus	24.08	11.25
Bra008278.1-P	Field mustard	nucleus	5.35	7.05
Bra005877.1-P	Field mustard	nucleus, plastid	8.7	5.68
Bra005875.1-P	Field mustard	nucleus	8.7	5.46

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	EnsemblPlantsGene:Bra025078	EnsemblPlants:Bra025078.1	EnsemblPlants:Bra025078.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0007275	GO:GO:0008150	GO:GO:0009653
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016049	GO:GO:0030154	GO:GO:0040007
GO:GO:0048767	InterPro:Homeobox-like_sf	InterPro:IPR017877	UniProt:M4E8H2	InterPro:Myb-like_dom	PFscan:PS50090
PANTHER:PTHR43999	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TMHMM:TMhelix	UniParc:UPI000253FC5D
SEG:seg	:	:	:	:	:

Description

AT5G45420 (E=1e-096) | myb family transcription factor

Coordinates

chrA06:+:25032140..25033039

Molecular Weight (calculated)

33736.7 Da

IEP (calculated)

6.708

GRAVY (calculated)

-0.849

Length

299 amino acids

Sequence
(BLAST)

001: MEFYDEDKPR FVFQSRPSSS RRKTDDEEEE DHKAPSKIFI SISVVISLLT LSLSFFYFES EPAQSLLLWL AISFLVGPFA PPPLTGGKIR VGYGQILEPE
101: EIKEEHSTDN ERESRRNKRS SKVTKSEKPP ENPHPVKVDR DRSEIHGSVK EWSEEEMEIL KKQLVKHPAG KPGRWEAVAA AFGGKYKTEN VIKKAKEIGE
201: KKVYESDDYA QFLKNRKASS SDPRLGEEEE EEDAGGDEET WSNGEDIALL NALKAFPKEA AMRWEKVAAA VPGKKSKAAC MKRVTELKKG FRSSKSGAN

Best Arabidopsis Sequence Match ( AT5G45420.3 )
(BLAST)

001: MDFFDEDRPR FVFQSRPSSS HTAEEEEEAR IPNKLFISIS VSISLIILSL SFFYFESEPA KSLLLWLSLS FLVGPFAPSS LTGGKIRVGY GQILEPEQIH
101: DESSTDNERE SRRKSVNKRS KGSTKSDNPP ENASAVTEVS RKVVIPQSKE SGSVNETKDW TAEEIEILKK QLIKHPAGKP GRWETVASAF GGRYKTENVI
201: KKAKEIGEKK IYESDDYAQF LKNRKASDPR LVDENEENSG AGGDAEGTKE IWSNGEDIAL LNALKAFPKE AAMRWEKIAA AVPGKSKAAC MKRVTELKKG
301: FRSSKTPAN

Arabidopsis Description

MAMYBTranscription factor MAMYB [Source:UniProtKB/Swiss-Prot;Acc:Q9ASQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.