Factsheet for GSMUA_Achr1P06330_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G187400.1	Wheat	nucleus	37.55	30.55
VIT_02s0012g00630.t01	Wine grape	nucleus	35.97	30.43
TraesCS7D01G294900.1	Wheat	nucleus	37.15	30.32
HORVU7Hr1G070730.1	Barley	nucleus	36.76	29.9
TraesCS7A01G299800.1	Wheat	nucleus	36.76	29.9
Zm00001d024538_P001	Maize	plasma membrane	37.15	29.65
KXG24493	Sorghum	nucleus, plastid	37.15	29.56
KRH59540	Soybean	endoplasmic reticulum, nucleus	36.36	29.11
Os08t0159000-01	Rice	nucleus	37.15	28.92
AT5G45420.2	Thale cress	nucleus	31.62	25.89
Solyc08g077290.1.1	Tomato	unclear	32.41	25.71
PGSC0003DMT400062221	Potato	nucleus	32.02	25.39
CDY38980	Canola	nucleus	29.64	25.34
CDY39426	Canola	nucleus	28.85	24.5
Bra025078.1-P	Field mustard	nucleus	28.85	24.41
VIT_13s0106g00370.t01	Wine grape	nucleus	19.76	19.61
GSMUA_Achr2P05590_001	Banana	nucleus	18.97	8.18

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886
GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016049	GO:GO:0030154	GO:GO:0040007	GO:GO:0048767	EnsemblPlantsGene:GSMUA_Achr1G06330_001	EnsemblPlants:GSMUA_Achr1P06330_001
EnsemblPlants:GSMUA_Achr1T06330_001	InterPro:Homeobox-like_sf	InterPro:IPR017877	UniProt:M0RXJ1	InterPro:Myb-like_dom	PFscan:PS50090
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TMHMM:TMhelix	UniParc:UPI0002957DF9	SEG:seg

Description

MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G06330_001]

Coordinates

chr1:-:5095035..5096329

Molecular Weight (calculated)

27626.5 Da

IEP (calculated)

8.461

GRAVY (calculated)

-0.555

Length

253 amino acids

Sequence
(BLAST)

001: MDYIEEEARP RFLFSSSSSS GASSAAAPAE TRKVSKFHAA ACLSAAAALL LLAYLSLSGS QILSSLLLWA ALSLALGPFA PLSATGGDAR VGHGDPVPDP
101: EPAPSFSDLD EPKRRVQGRR TRSQKLDGPP PPVATISKPA AAERNKDLIF VNGGGSTNDN KGKEQEEEKE WTDEDLELLK KQVSKHPVGE PRRWERIAEA
201: FQGRHGLDSV IDTAKSLSER RPAAGDPYQQ FLKQRKPVDK RGFKLWFEST MFW

Best Arabidopsis Sequence Match ( AT5G45420.3 )
(BLAST)

001: MDFFDEDRPR FVFQSRPSSS HTAEEEEEAR IPNKLFISIS VSISLIILSL SFFYFESEPA KSLLLWLSLS FLVGPFAPSS LTGGKIRVGY GQILEPEQIH
101: DESSTDNERE SRRKSVNKRS KGSTKSDNPP ENASAVTEVS RKVVIPQSKE SGSVNETKDW TAEEIEILKK QLIKHPAGKP GRWETVASAF GGRYKTENVI
201: KKAKEIGEKK IYESDDYAQF LKNRKASDPR LVDENEENSG AGGDAEGTKE IWSNGEDIAL LNALKAFPKE AAMRWEKIAA AVPGKSKAAC MKRVTELKKG
301: FRSSKTPAN

Arabidopsis Description

MAMYBTranscription factor MAMYB [Source:UniProtKB/Swiss-Prot;Acc:Q9ASQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.