Factsheet for GSMUA_Achr2P05590_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	extracellular
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g00790.t01	Wine grape	nucleus	67.63	61.17
KRH26350	Soybean	nucleus	64.74	59.75
Solyc01g096700.2.1	Tomato	nucleus	62.01	59.67
KRH44087	Soybean	nucleus	64.74	59.65
Zm00001d004025_P001	Maize	nucleus	64.4	57.89
Zm00001d004033_P001	Maize	nucleus	64.4	57.89
KXG26091	Sorghum	nucleus	64.4	57.89
OQU92158	Sorghum	nucleus	64.4	57.8
PGSC0003DMT400008515	Potato	nucleus	62.52	56.46
HORVU1Hr1G091820.1	Barley	nucleus	62.52	55.02
AT3G11450.1	Thale cress	nucleus	60.48	54.87
TraesCS1A01G420500.1	Wheat	cytosol	61.84	54.83
TraesCS1B01G451500.1	Wheat	cytosol	61.67	54.68
CDY08525	Canola	nucleus	59.45	54.53
Bra034841.1-P	Field mustard	nucleus	59.45	54.53
TraesCS1D01G428400.1	Wheat	nucleus	62.01	54.17
CDY56850	Canola	nucleus	59.11	54.13
AT5G06110.1	Thale cress	nucleus	57.92	51.28
CDX73875	Canola	nucleus	52.81	49.52
Bra001404.1-P	Field mustard	nucleus	52.81	48.21
Bra005877.1-P	Field mustard	nucleus, plastid	37.48	48.03
CDY53316	Canola	nucleus	53.32	47.79
Bra005875.1-P	Field mustard	nucleus	37.82	46.64
CDX80982	Canola	nucleus	33.05	45.97
Os04t0377932-00	Rice	nucleus	20.1	44.36
CDY11351	Canola	nucleus	27.6	43.2
CDX80983	Canola	nucleus	27.94	43.04
Zm00001d047099_P001	Maize	nucleus	23.68	40.76
CDY11348	Canola	nucleus	16.52	40.08
Bra008278.1-P	Field mustard	nucleus	12.95	33.48
Zm00001d047097_P001	Maize	nucleus	20.1	29.87
CDY11583	Canola	plastid	15.16	29.18
GSMUA_Achr1P06330_001	Banana	nucleus	8.18	18.97

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.287.110	MapMan:19.1.2.3	ncoils:Coil	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSMUA_Achr2G05590_001	EnsemblPlants:GSMUA_Achr2P05590_001	EnsemblPlants:GSMUA_Achr2T05590_001	InterPro:Homeobox-like_sf
InterPro:IPR001623	InterPro:IPR017877	InterPro:IPR017884	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:M0S5F0
InterPro:Myb-like_dom	PFAM:PF00226	PFAM:PF00249	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076
PFscan:PS50090	PFscan:PS51293	PANTHER:PTHR43999	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00271
SMART:SM00717	SUPFAM:SSF46565	SUPFAM:SSF46689	UniParc:UPI000295C1CD	SEG:seg	:

Description

Putative DnaJ homolog subfamily C member 2 [Source:GMGC_GENE;Acc:GSMUA_Achr2G05590_001]

Coordinates

chr2:-:10675819..10681064

Molecular Weight (calculated)

66837.8 Da

IEP (calculated)

6.717

GRAVY (calculated)

-0.759

Length

587 amino acids

Sequence
(BLAST)

001: MGRHEGTLLL TYLAEIQNGE PLFFSSNSLP VKAYNFEPAG HAFHFAALKL LGLWDEEDAE TDGQSVQSDD RGQEHLPSSD SYGSKGRKKS SAGSTQKDHY
101: ALLGLGHLRF LATEDQIRKS YRETALKHHP DKQAALILAE ETEEARQAKK DEIESHFKAI QEAYEVLIDP VKRRIYDSTD EFDDDIPTDC APQDFFKVFG
201: PAFMRNGRWS VSQPVPPLGD ENTSMEDVDS FYNFWYTFKS WREFPHADEF DLEQAESRDH KRWMERQNAK LREKARKEEH ARVRALEKEK KLLRKERTRL
301: RTLSAQLVSE NLLDLSEDIV ESICMSFDLE QLKLLCDTME GKEKMERAKL LRDAQGGSSS DVMKKGKTTS FQDLSLKPNG TVTDAKVGGP LSNYEKKERP
401: WGKEEIEMLR KGMQKYPKGT SRRWEVISEY IGTGRSVDEI LKATKTVLLR KPDSGKAFDS FLEKRKPVQT ISSPLSTRLE TEALPVDGTH AASSRTSAGD
501: QNPLEVQASN GVPAAVDQDA WSETQERALI QALKTFPKDV NQRWERVAAA VPGKTMIQCK KKFALMKESF RSKRNTDQLF VFNLICF

Best Arabidopsis Sequence Match ( AT5G06110.1 )
(BLAST)

001: MQSWGINSAI KLLTYSSELK DGQALYASSN CHPVKALNRE PAGHAFHSAA LKLRGCAKEA TSKNEDTDKK VPKEKDGEYI PSYDSHNIKG KKKSGKLQHD
101: HYALLGLGNL RYLATDDQIR KSYRDAALKH HPDKLATLLL LEETEEAKQA KKDEIESHFK LIQEAYEVLM DSTKRRIFDS TDEFDDKVPT DCAPQDFFKV
201: FGPAFKRNAR WSNSPLPDLG DENTPLKEVD RFYSTWYTFK SWREFPEEEE HDIEQAESRE EKRWMERENA RKTQKARKEE YARIRTLVDN AYKKDIRIQK
301: RKDDEKAKKL QKKEAKVMAK RQQEEAAAAA IEEEKRRKEE EAKRAAEAAQ LHKRAKEREK KLLRKERSRL RVLSAPVLSQ RLLGISDEHV EDLCMSLNTE
401: QLRKLCDKME NKEGMALAKV IKNGSNIDDD KIEIEEEEVQ VAVKQNGHIE ANGHVEANGH VEAKVDTATH EKKEKPWSKE EIDMLRKGTT KFPKGTSQRW
501: EVISEYIGTG RSVEEILKAT KTVLLQKPDS AKAFDSFLEN RKPAASINSP LSTREELGEP IIPTKAHEDN NSTKTETAEQ NGKTKENNNS NGNSEPAAAS
601: GSDPDGWSAV QERALVQALK TFPKETNQRW ERVATAVPGK TMNQCKKKFA DLKDVIRTKK PTA

Arabidopsis Description

Cell division related protein-like [Source:UniProtKB/TrEMBL;Acc:Q9LHS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.