Factsheet for Zm00001d004025_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004033_P001	Maize	nucleus	97.7	97.7
KXG26091	Sorghum	nucleus	93.72	93.72
Zm00001d047099_P001	Maize	nucleus	41.96	80.35
HORVU1Hr1G091820.1	Barley	nucleus	79.48	77.81
TraesCS1A01G420500.1	Wheat	cytosol	77.64	76.59
TraesCS1B01G451500.1	Wheat	cytosol	77.34	76.28
TraesCS1D01G428400.1	Wheat	nucleus	77.79	75.6
KRH26350	Soybean	nucleus	64.32	66.04
KRH44087	Soybean	nucleus	64.32	65.93
GSMUA_Achr2P05590_001	Banana	nucleus	57.89	64.4
PGSC0003DMT400008515	Potato	nucleus	63.25	63.54
VIT_01s0011g00790.t01	Wine grape	nucleus	62.48	62.87
Zm00001d047097_P001	Maize	nucleus	37.98	62.78
Solyc01g096700.2.1	Tomato	nucleus	58.19	62.3
Bra034841.1-P	Field mustard	nucleus	60.03	61.25
CDY08525	Canola	nucleus	59.88	61.09
CDY11348	Canola	nucleus	22.36	60.33
AT3G11450.1	Thale cress	nucleus	58.65	59.2
CDY56850	Canola	nucleus	58.04	59.13
Bra005877.1-P	Field mustard	nucleus, plastid	41.04	58.52
Os04t0377932-00	Rice	nucleus	23.28	57.14
Bra005875.1-P	Field mustard	nucleus	41.35	56.72
CDX80982	Canola	nucleus	36.6	56.64
CDY11351	Canola	nucleus	32.16	56.0
AT5G06110.1	Thale cress	nucleus	56.66	55.81
CDX80983	Canola	nucleus	32.31	55.38
CDX73875	Canola	nucleus	52.07	54.31
Bra001404.1-P	Field mustard	nucleus	51.76	52.57
CDY53316	Canola	nucleus	52.37	52.21
Bra008278.1-P	Field mustard	nucleus	17.92	51.54
CDY11583	Canola	plastid	20.21	43.28
Zm00001d024538_P001	Maize	plasma membrane	11.64	23.97

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.287.110	EntrezGene:103646599	MapMan:19.1.2.3	UniProt:A0A1D6ED23	ncoils:Coil
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
InterPro:Homeobox-like_sf	InterPro:IPR001623	InterPro:IPR017877	InterPro:IPR036869	InterPro:J_dom_sf	InterPro:Myb-like_dom
ProteinID:ONM18200.1	PFAM:PF00226	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS50090
PANTHER:PTHR43999	InterPro:SANT/Myb	SMART:SM00271	SMART:SM00717	SUPFAM:SSF46565	SUPFAM:SSF46689
UniParc:UPI00022079AE	EnsemblPlantsGene:Zm00001d004025	EnsemblPlants:Zm00001d004025_P001	EnsemblPlants:Zm00001d004025_T001	SEG:seg	:

Description

DnaJ domain ;Myb-like DNA-binding domain

Coordinates

chr2:+:76578813..76580774

Molecular Weight (calculated)

73449.2 Da

IEP (calculated)

8.413

GRAVY (calculated)

-0.856

Length

653 amino acids

Sequence
(BLAST)

001: MASQKSCLLI TFSQEIVDGV PLYVSSNCLP VKALKYEPAG HSFHAAAMKL LGLVEHEDIE TDDRSVSSDD KSQDFNTASD TFSSKGKKKS SGSQQQDHYA
101: LLGLGHLRFL ATEDQIRKSY REMALKHHPD KQAALILAET TEEAKQAKKD EIESHFKAIQ EAYEVLIDPT KRRIYDSTDE FDDDVPTDCA PQDFFKVFGP
201: AFMRNGRWSV TQPIPSLGDD TTPVEEVDKF YNFWYNFKSW REFPDDDEYD LEQAESREHK RWMERQNAKL QEKAKKVEYA RVRILVDNAY KKDPRIQRRK
301: EEEKAEKQRR REAKYLAKKL QEEEAAKAVE EERIRKEEES KKAAEAALHQ KKLKEKEKKL LRKEKTRLRT LAAPVIADSH FGLSEANVES ACASLDMEQL
401: KKLCDGMDSK DAAGKARLLS NVLRNESSSK EAKKIEGNGV EPSAPKSNST GGRATEASNS ILNSYEKKER PWGKEEIEML RKAIQKYPKG TSRRWEVVSE
501: FIGTSRSVEE ILKATKTVLL QKPDSSKAFD SFLEKRKPTQ SIASPLSTRD EISSTEGAGT ASSKAAAQSA NSQTANEKAA ADPVTDGGPS VSDPDAWTDA
601: QVLALVQALK AFPKDASQRW ERVAAAVPCK TVVQCKKKVA AMRENFRSKK SGE

Best Arabidopsis Sequence Match ( AT3G11450.1 )
(BLAST)

001: MPSRRSESAI RLITYSEELV DGKPFFAFSN CLPVKALNRE PAGHAFHSAA LKLHGCAEEP TDDEGGDKKV GDDKEKEYVP SFNSYANKGK KKSGTQQQDH
101: YALLGLSNLR YLATEDQIRK SYREAALKHH PDKLASLLLL EETEEAKEAK KDEIESRFKA IQEAYEVLMD PTRRRIFDST DEFDDEVPSD CLPQDFFKVF
201: GPAFKRNARW SVNQRIPDLG DENTPLKDVD KFYNFWYAFK SWREFPDEEE HDLEQADSRE ERRWMEKENA KKTVKARKEE HARIRTLVDN AYRKDPRIVK
301: RKEEEKAEKQ QKKDAKIQAK KKQEEDAAIA AEEEKRRKEE EEKRAAESAQ QQKKTKEREK KLLRKERNRL RTLSAPLVAQ RLLDISEEDI ENLCMSLNTE
401: QLQNLCDKMG NKEGLELAKV IKDGCNSSRN DEAESKEKVS KKTNGGTEPT TRVSQLDSST QKKQPWSKEE IDMLRKGMIK YPKGTSRRWE VISEYIGTGR
501: SVEEILKATK TVLLQKPDSA KAFDSFLEKR KPSASITSPL STREELGESL PTMTTTTNAK PSKETVVGKS SSSQSSDNNG EVGGSSDADS WSTVQERALV
601: QALKTFPKET SQRWERVAAA VPGKTMNQCK KKFAELKEII RNKKTGV

Arabidopsis Description

DnaJ and Myb-like DNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J6A8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.