Factsheet for Solyc01g096700.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008515	Potato	nucleus	96.89	90.92
KRH26350	Soybean	nucleus	70.0	67.14
KRH44087	Soybean	nucleus	69.51	66.56
VIT_01s0011g00790.t01	Wine grape	nucleus	69.84	65.64
GSMUA_Achr2P05590_001	Banana	nucleus	59.67	62.01
Bra034841.1-P	Field mustard	nucleus	63.11	60.16
CDY08525	Canola	nucleus	62.79	59.84
CDY56850	Canola	nucleus	62.3	59.28
AT3G11450.1	Thale cress	nucleus	62.79	59.2
Zm00001d004025_P001	Maize	nucleus	62.3	58.19
Zm00001d004033_P001	Maize	nucleus	62.13	58.04
OQU92158	Sorghum	nucleus	61.97	57.8
KXG26091	Sorghum	nucleus	61.8	57.73
HORVU1Hr1G091820.1	Barley	nucleus	62.46	57.12
TraesCS1A01G420500.1	Wheat	cytosol	60.66	55.89
AT5G06110.1	Thale cress	nucleus	60.33	55.51
TraesCS1B01G451500.1	Wheat	cytosol	60.16	55.44
TraesCS1D01G428400.1	Wheat	nucleus	60.33	54.76
Bra005877.1-P	Field mustard	nucleus, plastid	40.49	53.93
CDX73875	Canola	nucleus	54.92	53.51
CDX80982	Canola	nucleus	35.9	51.9
Bra001404.1-P	Field mustard	nucleus	54.26	51.48
CDY53316	Canola	nucleus	55.25	51.45
Bra005875.1-P	Field mustard	nucleus	40.0	51.26
CDY11351	Canola	nucleus	30.16	49.07
CDX80983	Canola	nucleus	30.49	48.82
CDY11348	Canola	nucleus	19.18	48.35
Os04t0377932-00	Rice	nucleus	20.82	47.74
Zm00001d047099_P001	Maize	nucleus	26.39	47.21
Bra008278.1-P	Field mustard	nucleus	13.61	36.56
CDY11583	Canola	plastid	17.38	34.75
Zm00001d047097_P001	Maize	nucleus	21.97	33.92
Solyc08g077290.1.1	Tomato	unclear	12.95	24.76

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.287.110	MapMan:15.5.2.2	MapMan:19.1.2.3	ncoils:Coil	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR001623	InterPro:IPR017877
InterPro:IPR017884	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:K4B058	InterPro:Myb-like_dom	PFAM:PF00226
PFAM:PF00249	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS50090	PFscan:PS51293
PANTHER:PTHR43999	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00271	SMART:SM00717	SUPFAM:SSF46565
SUPFAM:SSF46689	EnsemblPlantsGene:Solyc01g096700.2	EnsemblPlants:Solyc01g096700.2.1	UniParc:UPI0002767C3F	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:87720193..87722532

Molecular Weight (calculated)

69370.5 Da

IEP (calculated)

7.629

GRAVY (calculated)

-0.881

Length

610 amino acids

Sequence
(BLAST)

001: MASRSSIRLI SYSNEIINGE PIYISSNCYP IKAHKYEPAG LAFHSAALRL IGHVEKEDPK DGKEDVPNDK EQTFAYSSES YSSKGKKKSS TGEKVQDHYA
101: LLGLSNLRYL ASEDQIRKSY RDAALRHHPD KLASLLLAEE TEAAKQAKKE EIENHFKAIQ EAYEVLMDPV RRRIYDSTDE FDDEIPTECA PQDFFKVFGP
201: AFLRNGRWSV TQPIPSLGDE NTPIKEVDSF YNFWYSFKSW REFPHADEFD LEQAESRDHK RWMERQNAKL SEKARKEETA REAEAIRIVE EDKRKKEEEE
301: KRAAEVALQQ KKLKEKEKKL LRKERSRLRT LAAPVLSQRL LGLNDDDVEG LCMSLDIEQL RNLCDKADGQ GEIVIAELLR GALGHEHNLK YENKDEKIKS
401: QQNGSLDSKK QVPLMSSEKK EKPWSKEEID LLRKGMLKYP KGTSRRWEVI SDYIGTARTV EEILKATKTV LLQKPDSAKA FDSFLEKRKP APTIVSPLST
501: RAEVEGVENS SKPESGSAKV ADSQETPSQN TNSQNTEDAP TANGVSSSSD SDVWSAVQEK ALVQALKTFP KETSQRWERV ATAVPGKTMN QCKKKFALLK
601: ENFRSKKSAV

Best Arabidopsis Sequence Match ( AT3G11450.1 )
(BLAST)

001: MPSRRSESAI RLITYSEELV DGKPFFAFSN CLPVKALNRE PAGHAFHSAA LKLHGCAEEP TDDEGGDKKV GDDKEKEYVP SFNSYANKGK KKSGTQQQDH
101: YALLGLSNLR YLATEDQIRK SYREAALKHH PDKLASLLLL EETEEAKEAK KDEIESRFKA IQEAYEVLMD PTRRRIFDST DEFDDEVPSD CLPQDFFKVF
201: GPAFKRNARW SVNQRIPDLG DENTPLKDVD KFYNFWYAFK SWREFPDEEE HDLEQADSRE ERRWMEKENA KKTVKARKEE HARIRTLVDN AYRKDPRIVK
301: RKEEEKAEKQ QKKDAKIQAK KKQEEDAAIA AEEEKRRKEE EEKRAAESAQ QQKKTKEREK KLLRKERNRL RTLSAPLVAQ RLLDISEEDI ENLCMSLNTE
401: QLQNLCDKMG NKEGLELAKV IKDGCNSSRN DEAESKEKVS KKTNGGTEPT TRVSQLDSST QKKQPWSKEE IDMLRKGMIK YPKGTSRRWE VISEYIGTGR
501: SVEEILKATK TVLLQKPDSA KAFDSFLEKR KPSASITSPL STREELGESL PTMTTTTNAK PSKETVVGKS SSSQSSDNNG EVGGSSDADS WSTVQERALV
601: QALKTFPKET SQRWERVAAA VPGKTMNQCK KKFAELKEII RNKKTGV

Arabidopsis Description

DnaJ and Myb-like DNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J6A8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.