CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73875	Canola	nucleus	88.7	92.81
CDY56850	Canola	nucleus	68.09	69.58
CDY08525	Canola	nucleus	67.33	68.91
AT3G11450.1	Thale cress	nucleus	67.18	68.01
KRH44087	Soybean	nucleus	58.02	59.65
KRH26350	Soybean	nucleus	57.56	59.28
CDX80982	Canola	nucleus	37.25	57.82
CDY11348	Canola	nucleus	20.92	56.61
PGSC0003DMT400008515	Potato	nucleus	55.73	56.15
VIT_01s0011g00790.t01	Wine grape	nucleus	55.57	56.09
CDY11351	Canola	nucleus	32.06	56.0
CDX80983	Canola	nucleus	32.21	55.38
Solyc01g096700.2.1	Tomato	nucleus	51.45	55.25
GSMUA_Achr2P05590_001	Banana	nucleus	47.79	53.32
KXG26091	Sorghum	nucleus	52.37	52.53
Zm00001d004033_P001	Maize	nucleus	52.21	52.37
Zm00001d004025_P001	Maize	nucleus	52.21	52.37
OQU92158	Sorghum	nucleus	51.91	51.99
HORVU1Hr1G091820.1	Barley	nucleus	51.91	50.97
TraesCS1A01G420500.1	Wheat	cytosol	51.3	50.76
TraesCS1B01G451500.1	Wheat	cytosol	51.15	50.6
TraesCS1D01G428400.1	Wheat	nucleus	50.69	49.4
Os04t0377932-00	Rice	nucleus	18.02	44.36
Zm00001d047099_P001	Maize	nucleus	22.75	43.7
CDY11583	Canola	plastid	19.08	40.98
Zm00001d047097_P001	Maize	nucleus	21.07	34.94
CDY38980	Canola	nucleus	11.91	26.35
CDY39426	Canola	nucleus	11.6	25.5

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.287.110	MapMan:19.1.2.3	GO:A0A078IU00	UniProt:A0A078IU00	EnsemblPlants:CDY53316
ProteinID:CDY53316	ProteinID:CDY53316.1	ncoils:Coil	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00010434001	InterPro:Homeobox-like_sf	InterPro:IPR001623
InterPro:IPR017877	InterPro:IPR036869	InterPro:J_dom_sf	InterPro:Myb-like_dom	PFAM:PF00226	PFAM:PF00249
PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS50090	PANTHER:PTHR43999	InterPro:SANT/Myb
SMART:SM00271	SMART:SM00717	SUPFAM:SSF46565	SUPFAM:SSF46689	UniParc:UPI0004EE7A1C	SEG:seg

Description

BnaCnng24780DBnaCnng24780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IU00]

Coordinates

chrLK033187:+:33615..39080

Molecular Weight (calculated)

74965.1 Da

IEP (calculated)

9.241

GRAVY (calculated)

-1.150

Length

655 amino acids

Sequence
(BLAST)

001: MPSGRSDSAV KLITYSEELV DGKPFYEFSN SRPVKALNRE PAGHAFHSAA LKLLGCAEKP SAGEGSNKKV GDDDKEEEYS FPSFNPYANN KANKKKKKKP
101: GAQQQQDHQQ DHYALLGLRN LRYLATEDQI KKSYREAALK HHPDKQHAAL LLAEETEEAK EAKKDEIDSR FRAIQEAYEV LMDPTKRKIF DSTDEFDDED
201: CSPQEFFKVF GPAFKRIAKL WAKTSQRVPD LGDENTKLKD VEKFYSFWYG FKSLREFPDR GKHDLEKADS RQERRWMERE NAKKTAKDRK EDDVRIRNLV
301: DNAYRIDPRI AKREEEEEAK KQRKKEAKVM AEKKREEEAA EKEKMRKEEA KESAEKLKKE KEKERKLLLK ERNRLRTLSA HVLAQRLLSK EDVENLCMSL
401: NIQQLQSLCD TMGNKQGVEL ANVIKDHEAN SKEKENEKAN SKEKECEKAN ADGDAEPTKL DNTRKKQPWS KEEIDKLRKG IIKYPKGISR RWEVISDYIG
501: TGRTVEEVLK ATKTVLLQKP DSAKAFDTFL EKRKPTVSIA SPLSTREEEL GESLPMANNG EASGSSDADD HEANSKEKEN EKANSKEKES SGSSDADGWS
601: SVQERALVQA LKTLTKETSQ RWERVAAAVP GKTMVQCKKK FAELKELIRS KKAGV

Best Arabidopsis Sequence Match ( AT3G11450.1 )
(BLAST)

001: MPSRRSESAI RLITYSEELV DGKPFFAFSN CLPVKALNRE PAGHAFHSAA LKLHGCAEEP TDDEGGDKKV GDDKEKEYVP SFNSYANKGK KKSGTQQQDH
101: YALLGLSNLR YLATEDQIRK SYREAALKHH PDKLASLLLL EETEEAKEAK KDEIESRFKA IQEAYEVLMD PTRRRIFDST DEFDDEVPSD CLPQDFFKVF
201: GPAFKRNARW SVNQRIPDLG DENTPLKDVD KFYNFWYAFK SWREFPDEEE HDLEQADSRE ERRWMEKENA KKTVKARKEE HARIRTLVDN AYRKDPRIVK
301: RKEEEKAEKQ QKKDAKIQAK KKQEEDAAIA AEEEKRRKEE EEKRAAESAQ QQKKTKEREK KLLRKERNRL RTLSAPLVAQ RLLDISEEDI ENLCMSLNTE
401: QLQNLCDKMG NKEGLELAKV IKDGCNSSRN DEAESKEKVS KKTNGGTEPT TRVSQLDSST QKKQPWSKEE IDMLRKGMIK YPKGTSRRWE VISEYIGTGR
501: SVEEILKATK TVLLQKPDSA KAFDSFLEKR KPSASITSPL STREELGESL PTMTTTTNAK PSKETVVGKS SSSQSSDNNG EVGGSSDADS WSTVQERALV
601: QALKTFPKET SQRWERVAAA VPGKTMNQCK KKFAELKEII RNKKTGV

Arabidopsis Description

DnaJ and Myb-like DNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J6A8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.