CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26350	Soybean	nucleus	95.92	96.07
VIT_01s0011g00790.t01	Wine grape	nucleus	73.94	72.57
PGSC0003DMT400008515	Potato	nucleus	72.21	70.77
Solyc01g096700.2.1	Tomato	nucleus	66.56	69.51
CDY56850	Canola	nucleus	65.46	65.05
Bra034841.1-P	Field mustard	nucleus	65.31	65.0
OQU92158	Sorghum	nucleus	66.72	64.98
CDY08525	Canola	nucleus	65.15	64.84
Zm00001d004033_P001	Maize	nucleus	66.41	64.78
GSMUA_Achr2P05590_001	Banana	nucleus	59.65	64.74
AT3G11450.1	Thale cress	nucleus	65.62	64.61
Zm00001d004025_P001	Maize	nucleus	65.93	64.32
KXG26091	Sorghum	nucleus	65.93	64.32
HORVU1Hr1G091820.1	Barley	nucleus	65.31	62.37
TraesCS1A01G420500.1	Wheat	cytosol	63.89	61.48
TraesCS1B01G451500.1	Wheat	cytosol	63.58	61.18
CDY11348	Canola	nucleus	23.23	61.16
TraesCS1D01G428400.1	Wheat	nucleus	64.05	60.71
AT5G06110.1	Thale cress	nucleus	62.64	60.18
CDX73875	Canola	nucleus	58.24	59.27
Bra005877.1-P	Field mustard	nucleus, plastid	42.39	58.95
Bra001404.1-P	Field mustard	nucleus	59.03	58.48
CDY53316	Canola	nucleus	59.65	58.02
CDX80982	Canola	nucleus	38.15	57.58
Bra005875.1-P	Field mustard	nucleus	42.7	57.14
CDY11351	Canola	nucleus	33.28	56.53
CDX80983	Canola	nucleus	33.59	56.17
Zm00001d047099_P001	Maize	nucleus	28.89	53.96
Bra008278.1-P	Field mustard	nucleus	17.9	50.22
Os04t0377932-00	Rice	nucleus	20.09	48.12
CDY11583	Canola	plastid	21.04	43.93
Zm00001d047097_P001	Maize	nucleus	25.43	41.01
KRH59540	Soybean	endoplasmic reticulum, nucleus	12.87	25.95

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.10.287.110	EntrezGene:100814414	MapMan:19.1.2.3	EMBL:ACUP02004908	ncoils:Coil
InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	EnsemblPlantsGene:GLYMA_08G188900	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf
UniProt:I1KUP6	InterPro:IPR001623	InterPro:IPR017877	InterPro:IPR017884	InterPro:IPR036869	InterPro:J_dom_sf
EnsemblPlants:KRH44087	ProteinID:KRH44087	ProteinID:KRH44087.1	InterPro:Myb-like_dom	PFAM:PF00226	PFAM:PF00249
PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PFscan:PS50090	PFscan:PS51293	PANTHER:PTHR43999
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00271	SMART:SM00717	SUPFAM:SSF46565	SUPFAM:SSF46689
UniParc:UPI00023389B2	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:15139565..15143894

Molecular Weight (calculated)

73075.1 Da

IEP (calculated)

8.757

GRAVY (calculated)

-0.956

Length

637 amino acids

Sequence
(BLAST)

001: MAVHTKFRLI TYSQEIVDGQ PIFVSSNCLP IKALKFEPAG HSFHSAALKL LGVQEDNKDA DDKKVVDDKE QTYLPSDSYS SKSKKKTGTG DMQQDHYALL
101: GLGHLRYLAT EDQIRKSYRE TALRFHPDKQ AALLLAEETE AAKQAKKDEI ESHFKAIQEA YEVLIDPLKR RIYDSTDEFD DEIPTDCAPQ DFFKVFGPAF
201: MRNGRWSVNQ SIPSLGDDNT PIKEVDNFYN FWYSFKSWRE FPHADEFDLE QAESRDHKRW MERQNAKLTE KARKEDYARI RTLVDNAYKR DPRILRRKEE
301: EKAEKQRKKE AKFLAKKLQE EEAARIAEEE RQRKEEEERQ ATEAALQQKK VKEKEKKLLR KERARLRTLS GPILSHHLLD ISDDDVERLC MSLDIQQLRS
401: LCENMGGRQM LLEQAKVLRD ALSSKKEEAV DEKTNQQNAN GSIKANGSPS LSNIEKKEKP WSKEEIDLLR KGMQKYPKGT SRRWEVISEY IGTGRSVEEI
501: MKATKTVLLQ KPDSSKAFDT FLEKRKPGAQ SIESPLTTRE ELGVPAPASS TNNAEDSQNK GTDDQNSPAN GVSSSSEQDV WSAVQERALV QALKAFPKET
601: SQRWERVATA VPGKTVNQCK KKFALMKESF RNKKTAV

Best Arabidopsis Sequence Match ( AT3G11450.1 )
(BLAST)

001: MPSRRSESAI RLITYSEELV DGKPFFAFSN CLPVKALNRE PAGHAFHSAA LKLHGCAEEP TDDEGGDKKV GDDKEKEYVP SFNSYANKGK KKSGTQQQDH
101: YALLGLSNLR YLATEDQIRK SYREAALKHH PDKLASLLLL EETEEAKEAK KDEIESRFKA IQEAYEVLMD PTRRRIFDST DEFDDEVPSD CLPQDFFKVF
201: GPAFKRNARW SVNQRIPDLG DENTPLKDVD KFYNFWYAFK SWREFPDEEE HDLEQADSRE ERRWMEKENA KKTVKARKEE HARIRTLVDN AYRKDPRIVK
301: RKEEEKAEKQ QKKDAKIQAK KKQEEDAAIA AEEEKRRKEE EEKRAAESAQ QQKKTKEREK KLLRKERNRL RTLSAPLVAQ RLLDISEEDI ENLCMSLNTE
401: QLQNLCDKMG NKEGLELAKV IKDGCNSSRN DEAESKEKVS KKTNGGTEPT TRVSQLDSST QKKQPWSKEE IDMLRKGMIK YPKGTSRRWE VISEYIGTGR
501: SVEEILKATK TVLLQKPDSA KAFDSFLEKR KPSASITSPL STREELGESL PTMTTTTNAK PSKETVVGKS SSSQSSDNNG EVGGSSDADS WSTVQERALV
601: QALKTFPKET SQRWERVAAA VPGKTMNQCK KKFAELKEII RNKKTGV

Arabidopsis Description

DnaJ and Myb-like DNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J6A8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.