CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11348	Canola	nucleus	62.47	98.35
CDY11351	Canola	nucleus	95.54	97.07
CDX80982	Canola	nucleus	94.49	85.31
Bra008278.1-P	Field mustard	nucleus	49.87	83.7
CDY11583	Canola	plastid	44.88	56.07
CDY56850	Canola	nucleus	63.78	37.91
CDY08525	Canola	nucleus	62.73	37.34
AT5G06110.1	Thale cress	nucleus	63.52	36.5
KRH44087	Soybean	nucleus	56.17	33.59
KRH26350	Soybean	nucleus	55.91	33.49
CDX73875	Canola	nucleus	54.59	33.23
PGSC0003DMT400008515	Potato	nucleus	56.43	33.08
OQU92158	Sorghum	nucleus	56.17	32.72
Zm00001d004033_P001	Maize	nucleus	55.64	32.47
Zm00001d004025_P001	Maize	nucleus	55.38	32.31
KXG26091	Sorghum	nucleus	55.38	32.31
CDY53316	Canola	nucleus	55.38	32.21
VIT_01s0011g00790.t01	Wine grape	nucleus	54.86	32.2
TraesCS1A01G420500.1	Wheat	cytosol	55.38	31.87
TraesCS1B01G451500.1	Wheat	cytosol	55.38	31.87
HORVU1Hr1G091820.1	Barley	nucleus	55.64	31.78
TraesCS1D01G428400.1	Wheat	nucleus	55.38	31.4
Solyc01g096700.2.1	Tomato	nucleus	48.82	30.49
Zm00001d047099_P001	Maize	nucleus	27.03	30.21
GSMUA_Achr2P05590_001	Banana	nucleus	43.04	27.94
Zm00001d047097_P001	Maize	nucleus	18.37	17.72
Os04t0377932-00	Rice	nucleus	6.82	9.77
CDY38980	Canola	nucleus	7.35	9.46
CDY39426	Canola	nucleus	6.56	8.39

Protein Annotations

EnsemblPlants:CDX80983	EnsemblPlantsGene:GSBRNA2T00134412001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	ncoils:Coil	PANTHER:PTHR43999	PFAM:PF00226	PFscan:PS50076
PRINTS:PR00625	ProteinID:CDX80983	ProteinID:CDX80983.1	ScanProsite:PS00636	SEG:seg	SMART:SM00271
SUPFAM:SSF46565	UniParc:UPI0004EED8B4	MapMan:19.1.2.3	:	:	:

Description

BnaC03g02370D

Coordinates

chrLK031823:+:1139565..1141313

Molecular Weight (calculated)

44205.5 Da

IEP (calculated)

6.667

GRAVY (calculated)

-1.262

Length

381 amino acids

Sequence
(BLAST)

001: MQSLRSNSVK VVEDKEDTSD SPKKVANNDV EDIPSYETYK NSSSSNKGKK KKNKSGKEVK EQHDHYALLG LASLRYLATE DQIRKSYRDA ALKHHPDKLA
101: AALLLTEESE EAKEAKKEAI ESHFKLIQEA YEVLMDKTKR RIFDSTDEFD DEVPSECAPK DFFKVFGPAF KRNARWSVNT RVPDLGDENT PVKEVDSYYN
201: FWYAFKSWRE FPEEEEHDLE EAESREEKRW MERENARKTQ KARKEEYARI RTLVDNAYKK DPRIVKRKEE EKAKKQAKKD EKVMAKKKLE EEAAAAIEEE
301: KRRKEEEAKL AAEAAQQQKK NKEKEKKLRL KLAKVLKNGN NDETESEEEE VVEAKQNGHV EANGYSMVDT ATQSPRAAAM V

Best Arabidopsis Sequence Match ( AT3G11450.1 )
(BLAST)

001: MPSRRSESAI RLITYSEELV DGKPFFAFSN CLPVKALNRE PAGHAFHSAA LKLHGCAEEP TDDEGGDKKV GDDKEKEYVP SFNSYANKGK KKSGTQQQDH
101: YALLGLSNLR YLATEDQIRK SYREAALKHH PDKLASLLLL EETEEAKEAK KDEIESRFKA IQEAYEVLMD PTRRRIFDST DEFDDEVPSD CLPQDFFKVF
201: GPAFKRNARW SVNQRIPDLG DENTPLKDVD KFYNFWYAFK SWREFPDEEE HDLEQADSRE ERRWMEKENA KKTVKARKEE HARIRTLVDN AYRKDPRIVK
301: RKEEEKAEKQ QKKDAKIQAK KKQEEDAAIA AEEEKRRKEE EEKRAAESAQ QQKKTKEREK KLLRKERNRL RTLSAPLVAQ RLLDISEEDI ENLCMSLNTE
401: QLQNLCDKMG NKEGLELAKV IKDGCNSSRN DEAESKEKVS KKTNGGTEPT TRVSQLDSST QKKQPWSKEE IDMLRKGMIK YPKGTSRRWE VISEYIGTGR
501: SVEEILKATK TVLLQKPDSA KAFDSFLEKR KPSASITSPL STREELGESL PTMTTTTNAK PSKETVVGKS SSSQSSDNNG EVGGSSDADS WSTVQERALV
601: QALKTFPKET SQRWERVAAA VPGKTMNQCK KKFAELKEII RNKKTGV

Arabidopsis Description

DnaJ and Myb-like DNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J6A8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.