Factsheet for Zm00001d024538_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
ChloroP:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	nucleus

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24493	Sorghum	nucleus, plastid	89.27	88.99
TraesCS7D01G294900.1	Wheat	nucleus	65.3	66.77
HORVU7Hr1G070730.1	Barley	nucleus	65.3	66.56
TraesCS7A01G299800.1	Wheat	nucleus	65.3	66.56
TraesCS7B01G187400.1	Wheat	nucleus	64.67	65.92
Os08t0159000-01	Rice	nucleus	66.88	65.23
CDY38980	Canola	nucleus	38.49	41.22
CDY39426	Canola	nucleus	35.65	37.92
VIT_02s0012g00630.t01	Wine grape	nucleus	35.65	37.79
GSMUA_Achr1P06330_001	Banana	nucleus	29.65	37.15
KRH59540	Soybean	endoplasmic reticulum, nucleus	36.91	37.03
Bra025078.1-P	Field mustard	nucleus	34.7	36.79
AT5G45420.2	Thale cress	nucleus	35.65	36.57
Solyc08g077290.1.1	Tomato	unclear	36.28	36.05
PGSC0003DMT400062221	Potato	nucleus	35.65	35.42
VIT_13s0106g00370.t01	Wine grape	nucleus	25.24	31.37
Zm00001d004033_P001	Maize	nucleus	24.61	11.94
Zm00001d004025_P001	Maize	nucleus	23.97	11.64
Zm00001d047097_P001	Maize	nucleus	12.62	10.13
Zm00001d047099_P001	Maize	nucleus	7.89	7.33

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100282280	MapMan:15.5.2.2	ProteinID:AQK41452.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005886	GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016049	GO:GO:0030154	GO:GO:0040007	GO:GO:0048767
InterPro:Homeobox-like_sf	InterPro:IPR017877	UniProt:K7TLQ9	InterPro:Myb-like_dom	PFAM:PF00249	PFscan:PS50090
PANTHER:PTHR43999	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TMHMM:TMhelix	UniParc:UPI000221AC96
EnsemblPlantsGene:Zm00001d024538	EnsemblPlants:Zm00001d024538_P001	EnsemblPlants:Zm00001d024538_T001	SEG:seg	:	:

Description

Putative MYB DNA-binding domain superfamily protein

Coordinates

chr10:-:77078388..77079341

Molecular Weight (calculated)

33515.5 Da

IEP (calculated)

9.534

GRAVY (calculated)

-0.382

Length

317 amino acids

Sequence
(BLAST)

001: MEFIDPWDSQ SRARVVHSGA NSTSFSSSTA KAPLSLRHAA SCAAAAVALL AAAFYLLPTY QILSSLLIWI ASSLLLAPFA PLSATGGDIS VGRGRVVPAP
101: EPAPEPTPEP TPAPRRGRRQ NPVPTPTKPS DPGTPPVQSA ASLHPLQKAT TADGAVVDGG EREEDAGEWT DQELELLRRQ MVKHPAGEPQ RWEKIAAVFG
201: GRRTPENVIR AAKSGAPAAG GSSFEQFLRK RKPLDPRAEA AVTADDAGGA ESADAAWSAG DDRALLNALK EFPKDTAMRW EKVAASVPGK TKAVCMKRIT
301: ELKRDFRSTK TASEAAS

Best Arabidopsis Sequence Match ( AT5G45420.3 )
(BLAST)

001: MDFFDEDRPR FVFQSRPSSS HTAEEEEEAR IPNKLFISIS VSISLIILSL SFFYFESEPA KSLLLWLSLS FLVGPFAPSS LTGGKIRVGY GQILEPEQIH
101: DESSTDNERE SRRKSVNKRS KGSTKSDNPP ENASAVTEVS RKVVIPQSKE SGSVNETKDW TAEEIEILKK QLIKHPAGKP GRWETVASAF GGRYKTENVI
201: KKAKEIGEKK IYESDDYAQF LKNRKASDPR LVDENEENSG AGGDAEGTKE IWSNGEDIAL LNALKAFPKE AAMRWEKIAA AVPGKSKAAC MKRVTELKKG
301: FRSSKTPAN

Arabidopsis Description

MAMYBTranscription factor MAMYB [Source:UniProtKB/Swiss-Prot;Acc:Q9ASQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.