Factsheet for Os08t0159000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G294900.1	Wheat	nucleus	67.08	70.32
HORVU7Hr1G070730.1	Barley	nucleus	67.08	70.1
TraesCS7A01G299800.1	Wheat	nucleus	67.08	70.1
TraesCS7B01G187400.1	Wheat	nucleus	65.85	68.81
KXG24493	Sorghum	nucleus, plastid	66.15	67.61
Zm00001d024538_P001	Maize	plasma membrane	65.23	66.88
CDY38980	Canola	nucleus	38.46	42.23
Bra025078.1-P	Field mustard	nucleus	35.69	38.8
VIT_02s0012g00630.t01	Wine grape	nucleus	35.38	38.46
CDY39426	Canola	nucleus	35.08	38.26
AT5G45420.2	Thale cress	nucleus	36.31	38.19
GSMUA_Achr1P06330_001	Banana	nucleus	28.92	37.15
KRH59540	Soybean	endoplasmic reticulum, nucleus	36.0	37.03
Solyc08g077290.1.1	Tomato	unclear	35.69	36.36
PGSC0003DMT400062221	Potato	nucleus	35.08	35.74
VIT_13s0106g00370.t01	Wine grape	nucleus	24.92	31.76
Os04t0377932-00	Rice	nucleus	19.08	23.31

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	EntrezGene:4344711	EMBL:AK073617	EMBL:AK103973	ProteinID:BAC65017.1
ProteinID:BAF22954.1	ProteinID:BAT03919.1	ProteinID:EAZ41584.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005886	GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016049	GO:GO:0030154	GO:GO:0040007	GO:GO:0048767	InterPro:Homeobox-like_sf
InterPro:IPR017877	InterPro:Myb-like_dom	EnsemblPlantsGene:Os08g0159000	EnsemblPlants:Os08t0159000-01	PFAM:PF00249	PFAM:PF13921
PFscan:PS50090	PANTHER:PTHR43999	UniProt:Q84PV0	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
TMHMM:TMhelix	UniParc:UPI0000004612	RefSeq:XP_015650326.1	SEG:seg	:	:

Description

Similar to DnaJ homolog subfamily C member 1. (Os08t0159000-01)

Coordinates

chr8:+:3438448..3441867

Molecular Weight (calculated)

33785.2 Da

IEP (calculated)

6.955

GRAVY (calculated)

-0.490

Length

325 amino acids

Sequence
(BLAST)

001: MEFIDDDWDY QPRARVIHSR SNANSNGATT ASSSQPTRSL PHTAACAAAA VALLAAAYYL LPDYQVLASV VVWVASSLLL APFAPSSATG GDVSVGRGDP
101: LPEQEPVEEP VSDPAPTSRR GRRQSSSSNP TPPPPKPSDP IAPPPPRHAA AAAAAAATAV SDGGEAVEDA GEWTDQEMDI LRRQMVKHPA GEPQRWEKIA
201: AAFGGRRTPE SVIRAAKSGG GAAAAGASFD QFLRKRKPLD PRSEATDAGS GNAGGGGGES GDGSWSAGDD RALLNALKEF PKDTAMRWEK VAVAVPGKTK
301: AACMKRVTEL KRDFRSSKAA SEAAP

Best Arabidopsis Sequence Match ( AT5G45420.3 )
(BLAST)

001: MDFFDEDRPR FVFQSRPSSS HTAEEEEEAR IPNKLFISIS VSISLIILSL SFFYFESEPA KSLLLWLSLS FLVGPFAPSS LTGGKIRVGY GQILEPEQIH
101: DESSTDNERE SRRKSVNKRS KGSTKSDNPP ENASAVTEVS RKVVIPQSKE SGSVNETKDW TAEEIEILKK QLIKHPAGKP GRWETVASAF GGRYKTENVI
201: KKAKEIGEKK IYESDDYAQF LKNRKASDPR LVDENEENSG AGGDAEGTKE IWSNGEDIAL LNALKAFPKE AAMRWEKIAA AVPGKSKAAC MKRVTELKKG
301: FRSSKTPAN

Arabidopsis Description

MAMYBTranscription factor MAMYB [Source:UniProtKB/Swiss-Prot;Acc:Q9ASQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.