Factsheet for PGSC0003DMT400062221

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g077290.1.1	Tomato	unclear	90.6	90.6
VIT_02s0012g00630.t01	Wine grape	nucleus	47.65	50.84
KRH59540	Soybean	endoplasmic reticulum, nucleus	46.08	46.52
Bra025078.1-P	Field mustard	nucleus	42.63	45.48
CDY39426	Canola	nucleus	42.32	45.3
CDY38980	Canola	nucleus	42.01	45.27
AT5G45420.2	Thale cress	nucleus	42.95	44.34
KXG24493	Sorghum	nucleus, plastid	37.62	37.74
TraesCS7D01G294900.1	Wheat	nucleus	36.05	37.1
TraesCS7A01G299800.1	Wheat	nucleus	36.05	36.98
VIT_13s0106g00370.t01	Wine grape	nucleus	29.47	36.86
HORVU7Hr1G070730.1	Barley	nucleus	35.74	36.66
TraesCS7B01G187400.1	Wheat	nucleus	35.74	36.66
Zm00001d024538_P001	Maize	plasma membrane	35.42	35.65
Os08t0159000-01	Rice	nucleus	35.74	35.08
GSMUA_Achr1P06330_001	Banana	nucleus	25.39	32.02
PGSC0003DMT400008515	Potato	nucleus	24.45	12.0

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102603658	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005886	GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016049	GO:GO:0030154	GO:GO:0040007	GO:GO:0048767	InterPro:Homeobox-like_sf
InterPro:IPR017877	UniProt:M1C8Q6	InterPro:Myb-like_dom	EnsemblPlantsGene:PGSC0003DMG400024213	PGSC:PGSC0003DMG400024213	EnsemblPlants:PGSC0003DMT400062221
PFscan:PS50090	PANTHER:PTHR43999	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TMHMM:TMhelix
UniParc:UPI0002965450	RefSeq:XP_006358591.1	SEG:seg	:	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024213]

Coordinates

chr8:-:50148468..50149819

Molecular Weight (calculated)

35446.9 Da

IEP (calculated)

9.205

GRAVY (calculated)

-0.655

Length

319 amino acids

Sequence
(BLAST)

001: MEFLDEDARP RFLFQSKPLQ QSNSDPETQT RSLYRPGIII SISLSVLFFA LSILYFSFEP FGSIFLWISL SLLVGPFAPS SVTGGDIRVG LGEPIQDPPK
101: DDLSDTEPDT KKSNRRSNRP TKKNVDFEPV LATHYDLKPE KTNGSVANSK NSNGSVANLE KKVGDGVWNE GDEELLRKMM GKHPVGKPGR WEAIADGFNG
201: RYRVESVIKK SKELGEKKMS DGDSYQRFLK DRKTVDKRSE GGNEADFENV EAKNAVESGW SSGEDLALLN ALKTFPKEVA MRWEKIAAAV PGKNKAACMK
301: RMAELKKDFR SSKSANAEA

Best Arabidopsis Sequence Match ( AT5G45420.3 )
(BLAST)

001: MDFFDEDRPR FVFQSRPSSS HTAEEEEEAR IPNKLFISIS VSISLIILSL SFFYFESEPA KSLLLWLSLS FLVGPFAPSS LTGGKIRVGY GQILEPEQIH
101: DESSTDNERE SRRKSVNKRS KGSTKSDNPP ENASAVTEVS RKVVIPQSKE SGSVNETKDW TAEEIEILKK QLIKHPAGKP GRWETVASAF GGRYKTENVI
201: KKAKEIGEKK IYESDDYAQF LKNRKASDPR LVDENEENSG AGGDAEGTKE IWSNGEDIAL LNALKAFPKE AAMRWEKIAA AVPGKSKAAC MKRVTELKKG
301: FRSSKTPAN

Arabidopsis Description

MAMYBTranscription factor MAMYB [Source:UniProtKB/Swiss-Prot;Acc:Q9ASQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.