Factsheet for TraesCS7A01G299800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, vacuole
ChloroP:	plastid
MultiLoc:	vacuole
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G294900.1	Wheat	nucleus	97.75	98.06
TraesCS7B01G187400.1	Wheat	nucleus	97.11	97.11
HORVU7Hr1G070730.1	Barley	nucleus	91.96	91.96
Os08t0159000-01	Rice	nucleus	70.1	67.08
KXG24493	Sorghum	nucleus, plastid	67.85	66.35
Zm00001d024538_P001	Maize	plasma membrane	66.56	65.3
CDY38980	Canola	nucleus	41.16	43.24
Bra025078.1-P	Field mustard	nucleus	37.94	39.46
CDY39426	Canola	nucleus	37.62	39.26
AT5G45420.2	Thale cress	nucleus	38.26	38.51
VIT_02s0012g00630.t01	Wine grape	nucleus	36.33	37.79
Solyc08g077290.1.1	Tomato	unclear	38.59	37.62
KRH59540	Soybean	endoplasmic reticulum, nucleus	37.94	37.34
GSMUA_Achr1P06330_001	Banana	nucleus	29.9	36.76
PGSC0003DMT400062221	Potato	nucleus	36.98	36.05
VIT_13s0106g00370.t01	Wine grape	nucleus	26.37	32.16
TraesCS1A01G420500.1	Wheat	cytosol	24.44	11.48

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005886
GO:GO:0007275	GO:GO:0008150	GO:GO:0009653	GO:GO:0009987	GO:GO:0016020	GO:GO:0016049
GO:GO:0030154	GO:GO:0040007	GO:GO:0048767	InterPro:Homeobox-like_sf	InterPro:IPR017877	InterPro:Myb-like_dom
PFAM:PF00249	PFscan:PS50090	PANTHER:PTHR43999	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS7A01G299800	EnsemblPlants:TraesCS7A01G299800.1	TIGR:cd00167	SEG:seg	:

Description

No Description!

Coordinates

chr7A:+:412893948..412894883

Molecular Weight (calculated)

32878.6 Da

IEP (calculated)

7.515

GRAVY (calculated)

-0.491

Length

311 amino acids

Sequence
(BLAST)

001: MEFIDDDWDS QPRARVVHSR ADAAANFSSP TANPASRSLP HVAACAAAAV LLLAAAYSLD SAYQVFASIL VWIASSLLLA PFAPSSATGG DISVGRGSLL
101: PDQEPSQEPT PDPIAPSRRG RRQNAAPPPP KSSDPVAPPV QPPPLRQEAM GAGTAVLDGG EREEEVGEWT DQEMELLRRQ MLKHPAGEPQ RWEKIAAVFG
201: GRRTPESVIR AAKSGGATAA GGSFEQFLRK RKPLDPRAGA ADADTGGNAG GGDGGWSAGE DRSLLNALKE FPKDTAMRWE KVAAAVPGKT KAGCMKRVTE
301: LKRDFRSSKE P

Best Arabidopsis Sequence Match ( AT5G45420.3 )
(BLAST)

001: MDFFDEDRPR FVFQSRPSSS HTAEEEEEAR IPNKLFISIS VSISLIILSL SFFYFESEPA KSLLLWLSLS FLVGPFAPSS LTGGKIRVGY GQILEPEQIH
101: DESSTDNERE SRRKSVNKRS KGSTKSDNPP ENASAVTEVS RKVVIPQSKE SGSVNETKDW TAEEIEILKK QLIKHPAGKP GRWETVASAF GGRYKTENVI
201: KKAKEIGEKK IYESDDYAQF LKNRKASDPR LVDENEENSG AGGDAEGTKE IWSNGEDIAL LNALKAFPKE AAMRWEKIAA AVPGKSKAAC MKRVTELKKG
301: FRSSKTPAN

Arabidopsis Description

MAMYBTranscription factor MAMYB [Source:UniProtKB/Swiss-Prot;Acc:Q9ASQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.