Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G482300.1 | Wheat | nucleus | 84.34 | 78.65 |
| TraesCS5D01G495900.1 | Wheat | cytosol | 77.11 | 71.91 |
| HORVU5Hr1G113790.1 | Barley | cytosol, nucleus | 85.54 | 64.55 |
| HORVU5Hr1G113780.1 | Barley | cytosol, nucleus | 85.54 | 62.83 |
| Os03t0822400-01 | Rice | nucleus | 62.65 | 58.43 |
| KRH49124 | Soybean | cytosol, nucleus, plastid | 43.37 | 55.38 |
| AT5G02220.1 | Thale cress | cytosol, nucleus, plastid | 46.99 | 54.17 |
| CDY10460 | Canola | nucleus | 46.99 | 53.42 |
| CDY40340 | Canola | nucleus | 46.99 | 53.42 |
| Bra009606.1-P | Field mustard | nucleus | 46.99 | 53.42 |
| GSMUA_Achr6P17910_001 | Banana | nucleus | 46.99 | 50.65 |
| EER93180 | Sorghum | cytosol | 56.63 | 50.54 |
| VIT_13s0019g01870.t01 | Wine grape | cytosol | 40.96 | 48.57 |
| TraesCS3B01G393400.1 | Wheat | cytosol | 46.99 | 47.56 |
| KRH73050 | Soybean | cytosol | 39.76 | 47.14 |
| KRH15086 | Soybean | cytosol | 38.55 | 47.06 |
| Bra028880.1-P | Field mustard | nucleus | 40.96 | 46.58 |
| CDY04845 | Canola | nucleus | 40.96 | 46.58 |
| Zm00001d012956_P001 | Maize | cytosol | 53.01 | 46.32 |
| CDY48103 | Canola | nucleus | 42.17 | 46.05 |
| PGSC0003DMT400070004 | Potato | nucleus, peroxisome, plastid | 40.96 | 45.95 |
| CDY71405 | Canola | cytosol | 43.37 | 42.35 |
| CDY10280 | Canola | cytosol | 43.37 | 42.35 |
| CDY06711 | Canola | cytosol | 43.37 | 42.35 |
| Bra015583.1-P | Field mustard | cytosol | 43.37 | 42.35 |
| GSMUA_Achr2P16400_001 | Banana | cytosol | 42.17 | 40.23 |
| PGSC0003DMT400077975 | Potato | cytosol | 40.96 | 40.0 |
| Solyc06g076310.1.1 | Tomato | cytosol, nucleus, plastid | 39.76 | 39.76 |
| Solyc05g053050.1.1 | Tomato | cytosol, nucleus, peroxisome | 34.94 | 39.19 |
| AT1G07500.1 | Thale cress | cytosol | 38.55 | 39.02 |
| CDY15615 | Canola | cytosol | 37.35 | 36.47 |
| Bra030687.1-P | Field mustard | cytosol | 37.35 | 36.47 |
| CDX86476 | Canola | cytosol | 32.53 | 34.62 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G495400.1 | EnsemblPlantsGene:TraesCS5B01G495400 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF15 | SEG:seg | MapMan:13.1.1.3.2 |
Description
No Description!
Coordinates
chr5B:+:662975421..662975672
Molecular Weight (calculated)
9080.9 Da
IEP (calculated)
8.915
GRAVY (calculated)
-0.795
Length
83 amino acids
Sequence
(BLAST)
(BLAST)
1: MEYGVTTTVG EEQGWETPRR EGCRIPAVPT CPPPPPRKKP AVELGRGAAP RREPPKGGYF QPPDIESLFM LAPPRRHTAS TCA
1: MEEKNYDDGD TVTVDDDYQM GCTTPTRDDC RIPAYPPCPP PVRRKRSLLG FGKKREPPKK GYFQPPDLDL FFSVVAASQA AT
Arabidopsis Description
SMR5Cyclin-dependent protein kinase inhibitor SMR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNX4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.