Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G113790.1 | Barley | cytosol, nucleus | 97.35 | 100.0 |
| TraesCS5B01G495400.1 | Wheat | nucleus | 62.83 | 85.54 |
| TraesCS5A01G482300.1 | Wheat | nucleus | 61.95 | 78.65 |
| TraesCS5D01G495900.1 | Wheat | cytosol | 58.41 | 74.16 |
| Os03t0822400-01 | Rice | nucleus | 49.56 | 62.92 |
| KRH49124 | Soybean | cytosol, nucleus, plastid | 32.74 | 56.92 |
| AT5G02220.1 | Thale cress | cytosol, nucleus, plastid | 34.51 | 54.17 |
| Bra009606.1-P | Field mustard | nucleus | 34.51 | 53.42 |
| CDY40340 | Canola | nucleus | 34.51 | 53.42 |
| CDY10460 | Canola | nucleus | 34.51 | 53.42 |
| GSMUA_Achr6P17910_001 | Banana | nucleus | 36.28 | 53.25 |
| EER93180 | Sorghum | cytosol | 43.36 | 52.69 |
| HORVU3Hr1G086110.1 | Barley | cytosol | 37.17 | 52.5 |
| KRH73050 | Soybean | cytosol | 30.09 | 48.57 |
| VIT_13s0019g01870.t01 | Wine grape | cytosol | 30.09 | 48.57 |
| KRH15086 | Soybean | cytosol | 29.2 | 48.53 |
| Zm00001d012956_P001 | Maize | cytosol | 39.82 | 47.37 |
| PGSC0003DMT400070004 | Potato | nucleus, peroxisome, plastid | 30.97 | 47.3 |
| CDY04845 | Canola | nucleus | 30.09 | 46.58 |
| Bra028880.1-P | Field mustard | nucleus | 30.09 | 46.58 |
| CDY48103 | Canola | nucleus | 30.97 | 46.05 |
| CDY10280 | Canola | cytosol | 33.63 | 44.71 |
| Solyc06g076310.1.1 | Tomato | cytosol, nucleus, plastid | 32.74 | 44.58 |
| CDY71405 | Canola | cytosol | 32.74 | 43.53 |
| CDY06711 | Canola | cytosol | 32.74 | 43.53 |
| PGSC0003DMT400077975 | Potato | cytosol | 32.74 | 43.53 |
| Bra015583.1-P | Field mustard | cytosol | 32.74 | 43.53 |
| AT1G07500.1 | Thale cress | cytosol | 30.09 | 41.46 |
| Solyc05g053050.1.1 | Tomato | cytosol, nucleus, peroxisome | 26.55 | 40.54 |
| GSMUA_Achr2P16400_001 | Banana | cytosol | 30.97 | 40.23 |
| CDY15615 | Canola | cytosol | 27.43 | 36.47 |
| Bra030687.1-P | Field mustard | cytosol | 27.43 | 36.47 |
| CDX86476 | Canola | cytosol | 23.01 | 33.33 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G113780.1 | EnsemblPlantsGene:HORVU5Hr1G113780 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF15 | SEG:seg | UniParc:UPI000B466096 |
| UniProt:A0A287SSN5 | MapMan:13.1.1.3.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:642702902..642703639
Molecular Weight (calculated)
12470.9 Da
IEP (calculated)
8.660
GRAVY (calculated)
-0.790
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: SFGSHQLSSS SNKRIKKIAR AGAEDMEVEY GCEGVMRMAV EEEQGWETPR RDDCRIPAVP TCPPPPPRKK PAVELGRAAP RREPPKGGYF QPPDIESLFM
101: LAPPRRHAAS TCA
101: LAPPRRHAAS TCA
1: MEVVERKTEM AEEGCTTPRS TMYRIPVASV CPPPPRKKLM VVRKRDPPRN GYFQPPDLET LFYAQPRREA CA
Arabidopsis Description
SMR4Cyclin-dependent protein kinase inhibitor SMR4 [Source:UniProtKB/Swiss-Prot;Acc:Q1JPP8]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.