Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G482300.1 | Wheat | nucleus | 86.52 | 86.52 |
| TraesCS5B01G495400.1 | Wheat | nucleus | 71.91 | 77.11 |
| HORVU5Hr1G113790.1 | Barley | cytosol, nucleus | 74.16 | 60.0 |
| HORVU5Hr1G113780.1 | Barley | cytosol, nucleus | 74.16 | 58.41 |
| Os03t0822400-01 | Rice | nucleus | 57.3 | 57.3 |
| KRH49124 | Soybean | cytosol, nucleus, plastid | 41.57 | 56.92 |
| EER93180 | Sorghum | cytosol | 57.3 | 54.84 |
| Bra009606.1-P | Field mustard | nucleus | 44.94 | 54.79 |
| CDY40340 | Canola | nucleus | 44.94 | 54.79 |
| CDY10460 | Canola | nucleus | 44.94 | 54.79 |
| VIT_13s0019g01870.t01 | Wine grape | cytosol | 40.45 | 51.43 |
| AT5G02220.1 | Thale cress | cytosol, nucleus, plastid | 41.57 | 51.39 |
| GSMUA_Achr6P17910_001 | Banana | nucleus | 43.82 | 50.65 |
| CDY04845 | Canola | nucleus | 39.33 | 47.95 |
| Bra028880.1-P | Field mustard | nucleus | 39.33 | 47.95 |
| TraesCS3D01G354800.1 | Wheat | cytosol | 43.82 | 46.99 |
| CDY48103 | Canola | nucleus | 39.33 | 46.05 |
| PGSC0003DMT400077975 | Potato | cytosol | 43.82 | 45.88 |
| KRH73050 | Soybean | cytosol | 35.96 | 45.71 |
| KRH15086 | Soybean | cytosol | 34.83 | 45.59 |
| CDY10280 | Canola | cytosol | 42.7 | 44.71 |
| PGSC0003DMT400070004 | Potato | nucleus, peroxisome, plastid | 37.08 | 44.59 |
| Zm00001d012956_P001 | Maize | cytosol | 47.19 | 44.21 |
| GSMUA_Achr2P16400_001 | Banana | cytosol | 42.7 | 43.68 |
| CDY71405 | Canola | cytosol | 41.57 | 43.53 |
| CDY06711 | Canola | cytosol | 41.57 | 43.53 |
| Bra015583.1-P | Field mustard | cytosol | 41.57 | 43.53 |
| Solyc06g076310.1.1 | Tomato | cytosol, nucleus, plastid | 40.45 | 43.37 |
| AT1G07500.1 | Thale cress | cytosol | 39.33 | 42.68 |
| Solyc05g053050.1.1 | Tomato | cytosol, nucleus, peroxisome | 33.71 | 40.54 |
| CDY15615 | Canola | cytosol | 34.83 | 36.47 |
| Bra030687.1-P | Field mustard | cytosol | 34.83 | 36.47 |
| CDX86476 | Canola | cytosol | 28.09 | 32.05 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G495900.1 | EnsemblPlantsGene:TraesCS5D01G495900 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF15 | SEG:seg | MapMan:13.1.1.3.2 |
Description
No Description!
Coordinates
chr5D:+:526906041..526906310
Molecular Weight (calculated)
9823.9 Da
IEP (calculated)
7.187
GRAVY (calculated)
-0.648
Length
89 amino acids
Sequence
(BLAST)
(BLAST)
1: MEVEVPMEYG MTVTTVAEEQ GWETPRRDDC RIPALPACPP PPPRKKPAVE LGKAAPRREP PKGGYFQPPD IESLFMLAPP RRHAASTCA
1: MEEKNYDDGD TVTVDDDYQM GCTTPTRDDC RIPAYPPCPP PVRRKRSLLG FGKKREPPKK GYFQPPDLDL FFSVVAASQA AT
Arabidopsis Description
SMR5Cyclin-dependent protein kinase inhibitor SMR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNX4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.