Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G07500.1 | Thale cress | cytosol | 57.69 | 54.88 |
| CDY15615 | Canola | cytosol | 56.41 | 51.76 |
| CDY06711 | Canola | cytosol | 53.85 | 49.41 |
| CDY71405 | Canola | cytosol | 53.85 | 49.41 |
| CDY10280 | Canola | cytosol | 52.56 | 48.24 |
| HORVU3Hr1G086110.1 | Barley | cytosol | 34.62 | 33.75 |
| TraesCS3B01G393400.1 | Wheat | cytosol | 34.62 | 32.93 |
| TraesCS5B01G495400.1 | Wheat | nucleus | 34.62 | 32.53 |
| TraesCS3D01G354800.1 | Wheat | cytosol | 34.62 | 32.53 |
| Os03t0822400-01 | Rice | nucleus | 35.9 | 31.46 |
| GSMUA_Achr6P17910_001 | Banana | nucleus | 30.77 | 31.17 |
| TraesCS3A01G361000.1 | Wheat | cytosol | 32.05 | 30.86 |
| CDY40340 | Canola | nucleus | 28.21 | 30.14 |
| CDY10460 | Canola | nucleus | 28.21 | 30.14 |
| TraesCS5A01G482300.1 | Wheat | nucleus | 33.33 | 29.21 |
| Os01t0843700-01 | Rice | cytosol | 34.62 | 29.03 |
| Zm00001d042902_P001 | Maize | cytosol | 33.33 | 28.89 |
| TraesCS5D01G495900.1 | Wheat | cytosol | 32.05 | 28.09 |
| CDY48103 | Canola | nucleus | 26.92 | 27.63 |
| CDY04845 | Canola | nucleus | 25.64 | 27.4 |
| EER93180 | Sorghum | cytosol | 32.05 | 26.88 |
| GSMUA_Achr2P16400_001 | Banana | cytosol | 28.21 | 25.29 |
| Zm00001d012956_P001 | Maize | cytosol | 29.49 | 24.21 |
| HORVU5Hr1G113790.1 | Barley | cytosol, nucleus | 33.33 | 23.64 |
| HORVU5Hr1G113780.1 | Barley | cytosol, nucleus | 33.33 | 23.01 |
| KXG33680 | Sorghum | mitochondrion | 33.33 | 21.49 |
Protein Annotations
| EnsemblPlants:CDX86476 | EnsemblPlantsGene:GSBRNA2T00145069001 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF15 | ProteinID:CDX86476 | ProteinID:CDX86476.1 |
| UniParc:UPI0004EEDCED | MapMan:13.1.1.3.2 | : | : | : | : |
Description
BnaC08g02270D
Coordinates
chrLK031846:+:32624..32860
Molecular Weight (calculated)
8974.7 Da
IEP (calculated)
7.939
GRAVY (calculated)
-0.969
Length
78 amino acids
Sequence
(BLAST)
(BLAST)
1: MDNGFSCYDG ETEATVDDDY HMGCKTPTRE ECRIPAYPPC PPQVRRKRSI HFGKKREPPK NGFFLLKNKL DLDQTLLG
1: MEEKNYDDGD TVTVDDDYQM GCTTPTRDDC RIPAYPPCPP PVRRKRSLLG FGKKREPPKK GYFQPPDLDL FFSVVAASQA AT
Arabidopsis Description
SMR5Cyclin-dependent protein kinase inhibitor SMR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNX4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.