Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P17910_001 | Banana | nucleus | 56.32 | 63.64 |
| VIT_13s0019g01870.t01 | Wine grape | cytosol | 44.83 | 55.71 |
| Zm00001d042902_P001 | Maize | cytosol | 52.87 | 51.11 |
| TraesCS3A01G361000.1 | Wheat | cytosol | 47.13 | 50.62 |
| TraesCS3D01G354800.1 | Wheat | cytosol | 48.28 | 50.6 |
| HORVU3Hr1G086110.1 | Barley | cytosol | 45.98 | 50.0 |
| TraesCS3B01G393400.1 | Wheat | cytosol | 45.98 | 48.78 |
| AT5G02220.1 | Thale cress | cytosol, nucleus, plastid | 40.23 | 48.61 |
| KRH15086 | Soybean | cytosol | 37.93 | 48.53 |
| Os01t0843700-01 | Rice | cytosol | 51.72 | 48.39 |
| CDY10460 | Canola | nucleus | 39.08 | 46.58 |
| CDY40340 | Canola | nucleus | 39.08 | 46.58 |
| Bra009606.1-P | Field mustard | nucleus | 39.08 | 46.58 |
| KRH49124 | Soybean | cytosol, nucleus, plastid | 34.48 | 46.15 |
| KRH73050 | Soybean | cytosol | 36.78 | 45.71 |
| Bra028880.1-P | Field mustard | nucleus | 37.93 | 45.21 |
| CDY04845 | Canola | nucleus | 37.93 | 45.21 |
| CDY48103 | Canola | nucleus | 39.08 | 44.74 |
| Os03t0822400-01 | Rice | nucleus | 43.68 | 42.7 |
| TraesCS5D01G495900.1 | Wheat | cytosol | 43.68 | 42.7 |
| TraesCS5B01G495400.1 | Wheat | nucleus | 40.23 | 42.17 |
| Solyc05g053050.1.1 | Tomato | cytosol, nucleus, peroxisome | 34.48 | 40.54 |
| TraesCS5A01G482300.1 | Wheat | nucleus | 41.38 | 40.45 |
| PGSC0003DMT400070004 | Potato | nucleus, peroxisome, plastid | 33.33 | 39.19 |
| EER93180 | Sorghum | cytosol | 41.38 | 38.71 |
| CDY71405 | Canola | cytosol | 36.78 | 37.65 |
| CDY06711 | Canola | cytosol | 36.78 | 37.65 |
| Bra015583.1-P | Field mustard | cytosol | 36.78 | 37.65 |
| CDY10280 | Canola | cytosol | 36.78 | 37.65 |
| AT1G07500.1 | Thale cress | cytosol | 34.48 | 36.59 |
| KXG33680 | Sorghum | mitochondrion | 50.57 | 36.36 |
| Solyc06g076310.1.1 | Tomato | cytosol, nucleus, plastid | 33.33 | 34.94 |
| Bra030687.1-P | Field mustard | cytosol | 32.18 | 32.94 |
| CDY15615 | Canola | cytosol | 32.18 | 32.94 |
| HORVU5Hr1G113790.1 | Barley | cytosol, nucleus | 40.23 | 31.82 |
| PGSC0003DMT400077975 | Potato | cytosol | 31.03 | 31.76 |
| Zm00001d012956_P001 | Maize | cytosol | 34.48 | 31.58 |
| HORVU5Hr1G113780.1 | Barley | cytosol, nucleus | 40.23 | 30.97 |
| CDX86476 | Canola | cytosol | 25.29 | 28.21 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr2P16400_001 | EnsemblPlants:GSMUA_Achr2T16400_001 | EnsemblPlantsGene:GSMUA_Achr2G16400_001 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF16 | SEG:seg |
| UniParc:UPI000295ECAF | UniProt:M0S8I1 | MapMan:13.1.1.3.2 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G16400_001]
Coordinates
chr2:+:17296117..17296380
Molecular Weight (calculated)
9551.6 Da
IEP (calculated)
10.162
GRAVY (calculated)
-0.646
Length
87 amino acids
Sequence
(BLAST)
(BLAST)
1: MGAGRMEMQK IKIGRPGEEE EVAVGGWETP KRAEFRIPAA VRCPAPPKKK SPSVAFGKRG DPPKNGYFHP PDLEALFALF SRREACA
1: MEVVERKTEM AEEGCTTPRS TMYRIPVASV CPPPPRKKLM VVRKRDPPRN GYFQPPDLET LFYAQPRREA CA
Arabidopsis Description
SMR4Cyclin-dependent protein kinase inhibitor SMR4 [Source:UniProtKB/Swiss-Prot;Acc:Q1JPP8]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.