Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G086110.1 | Barley | cytosol | 66.67 | 75.0 |
| Os01t0843700-01 | Rice | cytosol | 76.67 | 74.19 |
| TraesCS3B01G393400.1 | Wheat | cytosol | 65.56 | 71.95 |
| TraesCS3D01G354800.1 | Wheat | cytosol | 65.56 | 71.08 |
| TraesCS3A01G361000.1 | Wheat | cytosol | 63.33 | 70.37 |
| KXG33680 | Sorghum | mitochondrion | 83.33 | 61.98 |
| GSMUA_Achr6P17910_001 | Banana | nucleus | 46.67 | 54.55 |
| GSMUA_Achr2P16400_001 | Banana | cytosol | 51.11 | 52.87 |
| VIT_13s0019g01870.t01 | Wine grape | cytosol | 37.78 | 48.57 |
| KRH73050 | Soybean | cytosol | 36.67 | 47.14 |
| KRH49124 | Soybean | cytosol, nucleus, plastid | 33.33 | 46.15 |
| KRH15086 | Soybean | cytosol | 34.44 | 45.59 |
| Bra009606.1-P | Field mustard | nucleus | 36.67 | 45.21 |
| CDY10460 | Canola | nucleus | 36.67 | 45.21 |
| CDY40340 | Canola | nucleus | 36.67 | 45.21 |
| AT5G02220.1 | Thale cress | cytosol, nucleus, plastid | 35.56 | 44.44 |
| CDY04845 | Canola | nucleus | 33.33 | 41.1 |
| Bra028880.1-P | Field mustard | nucleus | 33.33 | 41.1 |
| CDY71405 | Canola | cytosol | 37.78 | 40.0 |
| Bra015583.1-P | Field mustard | cytosol | 37.78 | 40.0 |
| CDY48103 | Canola | nucleus | 33.33 | 39.47 |
| PGSC0003DMT400070004 | Potato | nucleus, peroxisome, plastid | 32.22 | 39.19 |
| CDY15615 | Canola | cytosol | 36.67 | 38.82 |
| CDY10280 | Canola | cytosol | 36.67 | 38.82 |
| CDY06711 | Canola | cytosol | 36.67 | 38.82 |
| Bra030687.1-P | Field mustard | cytosol | 36.67 | 38.82 |
| Zm00001d012956_P001 | Maize | cytosol | 40.0 | 37.89 |
| AT1G07500.1 | Thale cress | cytosol | 34.44 | 37.8 |
| Solyc06g076310.1.1 | Tomato | cytosol, nucleus, plastid | 33.33 | 36.14 |
| Solyc05g053050.1.1 | Tomato | cytosol, nucleus, peroxisome | 28.89 | 35.14 |
| PGSC0003DMT400077975 | Potato | cytosol | 32.22 | 34.12 |
| CDX86476 | Canola | cytosol | 28.89 | 33.33 |
Protein Annotations
| EMBL:EU966846 | EnsemblPlants:Zm00001d042902_P001 | EnsemblPlants:Zm00001d042902_T001 | EnsemblPlantsGene:Zm00001d042902 | EntrezGene:100277116 | PANTHER:PTHR33142 |
| PANTHER:PTHR33142:SF16 | ProteinID:ONM36504.1 | SEG:seg | UniParc:UPI0000E64983 | UniProt:B6TPD1 | MapMan:13.1.1.3.2 |
Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:B6TPD1]
Coordinates
chr3:-:183448777..183449049
Molecular Weight (calculated)
9273.1 Da
IEP (calculated)
9.007
GRAVY (calculated)
-0.294
Length
90 amino acids
Sequence
(BLAST)
(BLAST)
1: MESSVGIEKA AAVAVGAGVG GGGGGYGCGG WETPKREECR IPATLPCPAA PRKAVPDFGK RRSPPKNGYF QPPDLEALFA LAPRRQAFCA
1: MEVVERKTEM AEEGCTTPRS TMYRIPVASV CPPPPRKKLM VVRKRDPPRN GYFQPPDLET LFYAQPRREA CA
Arabidopsis Description
SMR4Cyclin-dependent protein kinase inhibitor SMR4 [Source:UniProtKB/Swiss-Prot;Acc:Q1JPP8]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.