Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06711 | Canola | cytosol | 96.47 | 96.47 |
| Bra015583.1-P | Field mustard | cytosol | 94.12 | 94.12 |
| CDY71405 | Canola | cytosol | 94.12 | 94.12 |
| CDY15615 | Canola | cytosol | 70.59 | 70.59 |
| AT1G07500.1 | Thale cress | cytosol | 57.65 | 59.76 |
| CDX86476 | Canola | cytosol | 48.24 | 52.56 |
| CDY04845 | Canola | nucleus | 37.65 | 43.84 |
| TraesCS5B01G495400.1 | Wheat | nucleus | 42.35 | 43.37 |
| TraesCS5D01G495900.1 | Wheat | cytosol | 44.71 | 42.7 |
| TraesCS3B01G393400.1 | Wheat | cytosol | 41.18 | 42.68 |
| Os03t0822400-01 | Rice | nucleus | 43.53 | 41.57 |
| GSMUA_Achr6P17910_001 | Banana | nucleus | 37.65 | 41.56 |
| HORVU3Hr1G086110.1 | Barley | cytosol | 38.82 | 41.25 |
| CDY40340 | Canola | nucleus | 35.29 | 41.1 |
| CDY10460 | Canola | nucleus | 35.29 | 41.1 |
| CDY48103 | Canola | nucleus | 36.47 | 40.79 |
| TraesCS3D01G354800.1 | Wheat | cytosol | 38.82 | 39.76 |
| TraesCS3A01G361000.1 | Wheat | cytosol | 37.65 | 39.51 |
| TraesCS5A01G482300.1 | Wheat | nucleus | 40.0 | 38.2 |
| Os01t0843700-01 | Rice | cytosol | 41.18 | 37.63 |
| EER93180 | Sorghum | cytosol | 41.18 | 37.63 |
| GSMUA_Achr2P16400_001 | Banana | cytosol | 37.65 | 36.78 |
| Zm00001d042902_P001 | Maize | cytosol | 38.82 | 36.67 |
| HORVU5Hr1G113790.1 | Barley | cytosol, nucleus | 44.71 | 34.55 |
| HORVU5Hr1G113780.1 | Barley | cytosol, nucleus | 44.71 | 33.63 |
| Zm00001d012956_P001 | Maize | cytosol | 36.47 | 32.63 |
| KXG33680 | Sorghum | mitochondrion | 41.18 | 28.93 |
Protein Annotations
| EnsemblPlants:CDY10280 | EnsemblPlantsGene:GSBRNA2T00032109001 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF15 | ProteinID:CDY10280 | ProteinID:CDY10280.1 |
| SEG:seg | UniParc:UPI0004EBB07B | UniProt:A0A078F6X3 | MapMan:13.1.1.3.2 | : | : |
Description
BnaC05g05230DBnaC05g05230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6X3]
Coordinates
chrLK032001:-:889834..890091
Molecular Weight (calculated)
9455.2 Da
IEP (calculated)
7.804
GRAVY (calculated)
-0.586
Length
85 amino acids
Sequence
(BLAST)
(BLAST)
1: MDKGFGCYDS GKVVVDDDYD VGCKTPTRDE CRIPAYPLCP PPVRRKRSIV LGKNVEPPKN GYFQPPDLEL FFTAAAASRR QESCA
1: MEEKNYDDGD TVTVDDDYQM GCTTPTRDDC RIPAYPPCPP PVRRKRSLLG FGKKREPPKK GYFQPPDLDL FFSVVAASQA AT
Arabidopsis Description
SMR5Cyclin-dependent protein kinase inhibitor SMR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNX4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.