Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009606.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY40340 | Canola | nucleus | 100.0 | 100.0 |
| AT5G02220.1 | Thale cress | cytosol, nucleus, plastid | 86.3 | 87.5 |
| CDY04845 | Canola | nucleus | 68.49 | 68.49 |
| CDY48103 | Canola | nucleus | 65.75 | 63.16 |
| KRH49124 | Soybean | cytosol, nucleus, plastid | 43.84 | 49.23 |
| GSMUA_Achr6P17910_001 | Banana | nucleus | 50.68 | 48.05 |
| TraesCS5B01G495400.1 | Wheat | nucleus | 53.42 | 46.99 |
| TraesCS5A01G482300.1 | Wheat | nucleus | 56.16 | 46.07 |
| TraesCS5D01G495900.1 | Wheat | cytosol | 54.79 | 44.94 |
| Os03t0822400-01 | Rice | nucleus | 52.05 | 42.7 |
| HORVU3Hr1G086110.1 | Barley | cytosol | 45.21 | 41.25 |
| TraesCS3A01G361000.1 | Wheat | cytosol | 43.84 | 39.51 |
| GSMUA_Achr2P16400_001 | Banana | cytosol | 46.58 | 39.08 |
| TraesCS3B01G393400.1 | Wheat | cytosol | 43.84 | 39.02 |
| EER93180 | Sorghum | cytosol | 49.32 | 38.71 |
| TraesCS3D01G354800.1 | Wheat | cytosol | 43.84 | 38.55 |
| Zm00001d042902_P001 | Maize | cytosol | 45.21 | 36.67 |
| CDY71405 | Canola | cytosol | 42.47 | 36.47 |
| CDY06711 | Canola | cytosol | 42.47 | 36.47 |
| Os01t0843700-01 | Rice | cytosol | 45.21 | 35.48 |
| HORVU5Hr1G113790.1 | Barley | cytosol, nucleus | 53.42 | 35.45 |
| CDY15615 | Canola | cytosol | 41.1 | 35.29 |
| CDY10280 | Canola | cytosol | 41.1 | 35.29 |
| Zm00001d012956_P001 | Maize | cytosol | 45.21 | 34.74 |
| HORVU5Hr1G113780.1 | Barley | cytosol, nucleus | 53.42 | 34.51 |
| CDX86476 | Canola | cytosol | 30.14 | 28.21 |
| KXG33680 | Sorghum | mitochondrion | 43.84 | 26.45 |
Protein Annotations
| EnsemblPlants:CDY10460 | EnsemblPlantsGene:GSBRNA2T00032387001 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF15 | ProteinID:CDY10460 | ProteinID:CDY10460.1 |
| ProteinID:CDY40340.1 | UniParc:UPI0002547E03 | UniProt:A0A078HP48 | MapMan:13.1.1.3.2 | : | : |
Description
BnaCnng03610DBnaA10g27280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HP48]
Coordinates
chrLK032003:+:644098..644319
Molecular Weight (calculated)
8406.1 Da
IEP (calculated)
8.884
GRAVY (calculated)
-0.899
Length
73 amino acids
Sequence
(BLAST)
(BLAST)
1: MEEVVERTTE MAEEGCTTPR SSKYRIPVSL VCPPPPRKKS MVARKRDPPR NGYFQPPDLE TLFYAHPRRE ACA
1: MEVVERKTEM AEEGCTTPRS TMYRIPVASV CPPPPRKKLM VVRKRDPPRN GYFQPPDLET LFYAQPRREA CA
Arabidopsis Description
SMR4Cyclin-dependent protein kinase inhibitor SMR4 [Source:UniProtKB/Swiss-Prot;Acc:Q1JPP8]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.