Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G495900.1 | Wheat | cytosol | 86.52 | 86.52 |
| TraesCS5B01G495400.1 | Wheat | nucleus | 78.65 | 84.34 |
| HORVU5Hr1G113790.1 | Barley | cytosol, nucleus | 78.65 | 63.64 |
| HORVU5Hr1G113780.1 | Barley | cytosol, nucleus | 78.65 | 61.95 |
| Os03t0822400-01 | Rice | nucleus | 57.3 | 57.3 |
| EER93180 | Sorghum | cytosol | 59.55 | 56.99 |
| Bra009606.1-P | Field mustard | nucleus | 46.07 | 56.16 |
| CDY10460 | Canola | nucleus | 46.07 | 56.16 |
| CDY40340 | Canola | nucleus | 46.07 | 56.16 |
| KRH49124 | Soybean | cytosol, nucleus, plastid | 39.33 | 53.85 |
| AT5G02220.1 | Thale cress | cytosol, nucleus, plastid | 42.7 | 52.78 |
| GSMUA_Achr6P17910_001 | Banana | nucleus | 44.94 | 51.95 |
| TraesCS3A01G361000.1 | Wheat | cytosol | 47.19 | 51.85 |
| Bra028880.1-P | Field mustard | nucleus | 39.33 | 47.95 |
| CDY04845 | Canola | nucleus | 39.33 | 47.95 |
| Zm00001d012956_P001 | Maize | cytosol | 50.56 | 47.37 |
| VIT_13s0019g01870.t01 | Wine grape | cytosol | 37.08 | 47.14 |
| KRH73050 | Soybean | cytosol | 37.08 | 47.14 |
| KRH15086 | Soybean | cytosol | 35.96 | 47.06 |
| CDY48103 | Canola | nucleus | 39.33 | 46.05 |
| Solyc06g076310.1.1 | Tomato | cytosol, nucleus, plastid | 40.45 | 43.37 |
| PGSC0003DMT400070004 | Potato | nucleus, peroxisome, plastid | 35.96 | 43.24 |
| PGSC0003DMT400077975 | Potato | cytosol | 40.45 | 42.35 |
| GSMUA_Achr2P16400_001 | Banana | cytosol | 40.45 | 41.38 |
| AT1G07500.1 | Thale cress | cytosol | 37.08 | 40.24 |
| CDY10280 | Canola | cytosol | 38.2 | 40.0 |
| CDY06711 | Canola | cytosol | 37.08 | 38.82 |
| Bra015583.1-P | Field mustard | cytosol | 37.08 | 38.82 |
| CDY71405 | Canola | cytosol | 37.08 | 38.82 |
| Solyc05g053050.1.1 | Tomato | cytosol, nucleus, peroxisome | 31.46 | 37.84 |
| Bra030687.1-P | Field mustard | cytosol | 33.71 | 35.29 |
| CDY15615 | Canola | cytosol | 33.71 | 35.29 |
| CDX86476 | Canola | cytosol | 29.21 | 33.33 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G482300.1 | EnsemblPlantsGene:TraesCS5A01G482300 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF15 | SEG:seg | MapMan:13.1.1.3.2 |
Description
No Description!
Coordinates
chr5A:+:654084102..654084371
Molecular Weight (calculated)
9747.7 Da
IEP (calculated)
8.050
GRAVY (calculated)
-0.683
Length
89 amino acids
Sequence
(BLAST)
(BLAST)
1: MEVEVPMEYG VTTTTVAEEQ GWETPRREDC RIPALPTCPP PPPRKKPAAE LGRAAPRRGP PKGGYFQPPD IESLFLLAPP RRHAASTCA
1: MEVVERKTEM AEEGCTTPRS TMYRIPVASV CPPPPRKKLM VVRKRDPPRN GYFQPPDLET LFYAQPRREA CA
Arabidopsis Description
SMR4Cyclin-dependent protein kinase inhibitor SMR4 [Source:UniProtKB/Swiss-Prot;Acc:Q1JPP8]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.