Factsheet for TraesCS6D01G089200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G093200.1	Wheat	golgi	96.76	84.1
TraesCS6B01G122000.1	Wheat	vacuole	75.69	79.76
TraesCS2D01G308500.1	Wheat	golgi	89.58	77.71
HORVU2Hr1G077130.1	Barley	extracellular, vacuole	88.89	76.95
Os04t0443300-00	Rice	vacuole	76.85	66.4
Zm00001d025475_P001	Maize	extracellular, vacuole	77.55	65.82
EES12225	Sorghum	plastid	77.55	65.05
VIT_18s0089g00210.t01	Wine grape	extracellular, vacuole	64.35	56.28
GSMUA_Achr6P07430_001	Banana	extracellular, vacuole	59.95	56.06
AT1G71380.1	Thale cress	extracellular	61.57	54.96
KRH62487	Soybean	extracellular, vacuole	61.11	54.55
KRH56424	Soybean	extracellular, vacuole	61.11	54.55
CDY12503	Canola	extracellular, vacuole	60.88	54.45
CDY25758	Canola	extracellular, vacuole	60.65	54.24
CDX96319	Canola	extracellular, plastid, vacuole	60.65	54.13
Bra012349.1-P	Field mustard	extracellular, plastid, vacuole	60.42	54.04
Bra016143.1-P	Field mustard	extracellular, plastid, vacuole	60.42	53.93
CDY66787	Canola	extracellular, plastid, vacuole	59.72	53.31
AT1G22880.1	Thale cress	extracellular	59.72	53.31
Bra007982.1-P	Field mustard	extracellular	59.49	53.1
CDY03687	Canola	extracellular	59.03	52.69
Solyc11g040340.1.1	Tomato	extracellular, vacuole	58.33	52.61
PGSC0003DMT400021687	Potato	vacuole	58.33	52.28
CDY03686	Canola	extracellular	58.33	52.17
CDY37939	Canola	extracellular, vacuole	58.1	51.97
Bra007983.1-P	Field mustard	extracellular	57.87	51.76
CDY37936	Canola	extracellular	53.24	50.44
TraesCS1D01G365100.1	Wheat	extracellular, vacuole	57.64	50.0
TraesCS5D01G176800.1	Wheat	endoplasmic reticulum, extracellular, vacuole	56.48	48.9
TraesCS7D01G314400.1	Wheat	vacuole	55.32	48.38
TraesCS7D01G207600.1	Wheat	extracellular	53.7	46.49
TraesCS6D01G275900.1	Wheat	extracellular	53.47	46.39
TraesCS5D01G323700.2	Wheat	vacuole	53.24	41.82
TraesCS1D01G074900.1	Wheat	cytosol, mitochondrion, plastid, vacuole	43.06	40.09
TraesCS1D01G074700.1	Wheat	extracellular, vacuole	44.68	39.39
TraesCS1D01G075100.1	Wheat	vacuole	44.68	39.39
TraesCS1D01G090100.1	Wheat	extracellular	45.37	38.97
TraesCS1D01G074800.1	Wheat	vacuole	40.51	37.72
TraesCS7D01G146000.1	Wheat	endoplasmic reticulum, extracellular, vacuole	43.75	36.7
TraesCS7D01G201000.1	Wheat	extracellular, vacuole	44.21	35.9
TraesCS6D01G291800.1	Wheat	vacuole	44.91	35.66
TraesCS6D01G112100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	43.29	35.35
TraesCS5D01G208900.1	Wheat	vacuole	43.06	34.7
TraesCS6D01G318100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	40.28	34.25
TraesCS2D01G557500.1	Wheat	extracellular	46.99	32.9
TraesCS1D01G397400.1	Wheat	extracellular, vacuole	46.06	32.1
TraesCS3D01G153400.1	Wheat	extracellular, mitochondrion, plastid, vacuole	44.91	29.71

Protein Annotations

EnsemblPlants:TraesCS6D01G089200.1	EnsemblPlantsGene:TraesCS6D01G089200	Gene3D:1.50.10.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf
InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_His_AS	InterPro:IPR012341	KEGG:00500+3.2.1.4	PANTHER:PTHR22298	PANTHER:PTHR22298:SF54
PFAM:PF00759	ScanProsite:PS00592	SEG:seg	SUPFAM:SSF48208	MapMan:21.1.3.1	:

Description

No Description!

Coordinates

chr6D:+:54238535..54240120

Molecular Weight (calculated)

47138.1 Da

IEP (calculated)

8.320

GRAVY (calculated)

-0.366

Length

432 amino acids

Sequence
(BLAST)

001: MSDGSAANVD LTGGYYDGGN NVKFNFPMAF TATMLSWSII EYGGRMDGRV HDARAAVRWA TDYLLKAART TPGKLYVGVG DADADHRCWE RPEDMDTPRD
101: VYAVSASAPG SDVAGETAAA LAAASVVFRA ADRAYSRRLV AAARDVMAFS WQHQGKYSDH VGGGVGNYYP SHSGYKDELL WGCAWLLWAT KNSSYLNDLI
201: SLGANDDVDV FSWDNKLAGA RVLLSRRALL DGDKRLEPFT RQAEEFICHI LPNSSSPSST TAYTPGGLMH RRGNVNMQYV ASASFLLTTY AKYMAASRRR
301: AFSCQNSHPV THRALRALAK RQVDYVLGDN PLGMSYMVGY GARYPQRIHH RASSMPSVAA HPARIGCQEG YRSYLNAAGP NPNVHTGAVV GGPDENDAFP
401: DDRADYARSE PVTYTNAPLV GCLAYFAGRY KN

Best Arabidopsis Sequence Match ( AT1G02800.1 )
(BLAST)

001: MALYLSSSRL ITFLSFILLL SNGFSSSSSR PSIHHRHHLD NHNYKDALSK SILFFEGQRS GKLPPNQRMT WRSNSGLSDG SALNVDLVGG YYDAGDNMKF
101: GFPMAFTTTM LSWSLIEFGG LMKSELPNAK DAIRWATDFL LKATSHPDTI YVQVGDPNMD HACWERPEDM DTPRSVFKVD KNNPGSDIAG EIAAALAAAS
201: IVFRKCDPSY SNHLLQRAIT VFTFADKYRG PYSAGLAPEV CPFYCSYSGY QDELLWGAAW LQKATNNPTY LNYIKANGQI LGADEFDNMF SWDNKHVGAR
301: ILLSKEFLIQ KVKSLEEYKE HADSFICSVL PGASSSQYTP GGLLFKMGES NMQYVTSTSF LLLTYAKYLT SARTVAYCGG SVVTPARLRS IAKKQVDYLL
401: GGNPLKMSYM VGYGLKYPRR IHHRGSSLPS VAVHPTRIQC HDGFSLFTSQ SPNPNDLVGA VVGGPDQNDQ FPDERSDYGR SEPATYINAP LVGALAYLAR
501: S

Arabidopsis Description

CEL2Endoglucanase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRX3]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.