Factsheet for TraesCS6A01G093200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G089200.1	Wheat	golgi	84.1	96.76
TraesCS6B01G122000.1	Wheat	vacuole	77.06	93.41
HORVU2Hr1G077130.1	Barley	extracellular, vacuole	89.34	88.98
TraesCS2A01G310200.1	Wheat	vacuole	86.92	85.54
Os04t0443300-00	Rice	vacuole	76.46	76.0
Zm00001d025475_P001	Maize	extracellular, vacuole	75.86	74.07
EES12225	Sorghum	plastid	75.65	73.01
GSMUA_Achr6P07430_001	Banana	extracellular, vacuole	58.75	63.2
VIT_18s0089g00210.t01	Wine grape	extracellular, vacuole	62.37	62.75
KRH56424	Soybean	extracellular, vacuole	59.96	61.57
KRH62487	Soybean	extracellular, vacuole	59.56	61.16
CDY12503	Canola	extracellular, vacuole	59.15	60.87
AT1G71380.1	Thale cress	extracellular	59.15	60.74
CDX96319	Canola	extracellular, plastid, vacuole	58.95	60.54
CDY25758	Canola	extracellular, vacuole	58.55	60.25
Bra016143.1-P	Field mustard	extracellular, plastid, vacuole	58.55	60.12
Bra012349.1-P	Field mustard	extracellular, plastid, vacuole	58.15	59.83
CDY66787	Canola	extracellular, plastid, vacuole	57.95	59.5
AT1G22880.1	Thale cress	extracellular	57.95	59.5
Bra007982.1-P	Field mustard	extracellular	57.55	59.09
Solyc11g040340.1.1	Tomato	extracellular, vacuole	56.74	58.87
PGSC0003DMT400021687	Potato	vacuole	56.74	58.51
CDY03687	Canola	extracellular	56.94	58.47
CDY37939	Canola	extracellular, vacuole	56.54	58.18
CDY03686	Canola	extracellular	56.54	58.18
Bra007983.1-P	Field mustard	extracellular	56.14	57.76
CDY37936	Canola	extracellular	52.31	57.02
TraesCS5A01G172100.1	Wheat	extracellular, vacuole	54.53	54.31
TraesCS7A01G317700.1	Wheat	extracellular	52.92	53.24
TraesCS1A01G360700.3	Wheat	extracellular, vacuole	55.73	52.56
TraesCS6A01G295300.1	Wheat	extracellular	52.11	52.22
TraesCS7A01G204500.1	Wheat	extracellular	52.72	52.09
TraesCS5A01G317400.1	Wheat	plastid	52.52	51.18
TraesCS5A01G172200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	53.92	50.57
TraesCS1A01G072100.1	Wheat	nucleus	43.46	44.08
TraesCS1A01G088700.1	Wheat	extracellular	44.47	43.68
TraesCS1A01G072300.1	Wheat	vacuole	43.26	43.52
TraesCS7A01G144400.1	Wheat	cytosol, vacuole	34.21	40.67
TraesCS7A01G144500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	42.05	40.58
TraesCS6A01G122100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	43.06	40.45
TraesCS7A01G144700.1	Wheat	vacuole	41.85	40.15
TraesCS6A01G312400.1	Wheat	vacuole	43.26	39.89
TraesCS5A01G202600.1	Wheat	vacuole	42.05	38.99
TraesCS6A01G337300.1	Wheat	mitochondrion	39.44	38.66
TraesCS7A01G197900.1	Wheat	extracellular, vacuole	43.46	37.05
TraesCS1A01G389300.1	Wheat	extracellular, vacuole	45.47	36.39
TraesCS2A01G556300.1	Wheat	vacuole	45.27	34.88
TraesCS3A01G144600.1	Wheat	extracellular, vacuole	43.86	34.6

Protein Annotations

KEGG:00500+3.2.1.4	Gene3D:1.50.10.10	MapMan:21.1.3.1	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Glyco_hydro_9	InterPro:Glyco_hydro_9_His_AS	InterPro:IPR012341	PFAM:PF00759	ScanProsite:PS00592	PANTHER:PTHR22298
PANTHER:PTHR22298:SF54	SUPFAM:SSF48208	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS6A01G093200	EnsemblPlants:TraesCS6A01G093200.1	SEG:seg

Description

No Description!

Coordinates

chr6A:-:61006015..61007818

Molecular Weight (calculated)

54112.3 Da

IEP (calculated)

8.127

GRAVY (calculated)

-0.318

Length

497 amino acids

Sequence
(BLAST)

001: MSNSAPSSRA AVFLAFSLVW FSSHVLTAGH PDYADALAKS LLFFQGQRSG RLPPDQAVKW RSNSAMSDGS AANVDLTGGY YDGGNNVKFN FPMAFTATML
101: SWSIIEYGGR MDGRVHDARA AVRWATDYLL KSAKATPGKL YVGVGDADAD HRCWERPEDM DTPRDVYAVS ASAPGSDVAG ETAAALAAAS VVFRAADRAY
201: SRRLLAAARD VMAFAWQHQG KYSDHVGGGV GNYYPSHSGY KDELLWGCAW LLWATKNSSY LNDLISLGAN DDLDVFSWDN KLAGARVLLS RRALLDGDER
301: LEPFTRQAEE FICHILPNSS SPSSTTAYTP GGLMHRPGNV NMQYVASASF LLTTYAKYMA ASRRRAFSCQ NSRPVTHRNL RALAKRQVDY VLGDNPLGMS
401: YMVGYGARYP QRIHHRASSM PSVAAHPAHI GCQEGYRSYL NAPGPNPNVH TGAVVGGPDE NDAFPDDRVD YARSEPVTYT NAPLVGCLAY FAGSYKN

Best Arabidopsis Sequence Match ( AT1G71380.1 )
(BLAST)

001: MTSLFFFVLL FSSLLISNGD ANPNYKEALS KSLLFFQGQR SGPLPRGQQI SWRASSGLSD GSAAHVDLTG GYYDAGDNVK FNLPMAFTTT MLSWSALEYG
101: KRMGPELENA RVNIRWATDY LLKCARATPG KLYVGVGDPN VDHKCWERPE DMDTPRTVYS VSASNPGSDV AAETAAALAA ASMVFRKVDS KYSRLLLATA
201: KDVMQFAIQY QGAYSDSLSS SVCPFYCSYS GYKDELMWGA SWLLRATNNP YYANFIKSLG GGDQPDIFSW DNKYAGAYVL LSRRALLNKD SNFEQYKQAA
301: ENFICKILPD SPSSSTQYTQ GGLMYKLPQS NLQYVTSITF LLTTYAKYMK ATKHTFNCGS SVIVPNALIS LSKRQVDYIL GDNPIKMSYM VGFSSNFPKR
401: IHHRASSLPS HALRSQSLGC NGGFQSFYTQ NPNPNILTGA IVGGPNQNDG YPDQRDDYSH AEPATYINAA FVGPLAYFAA GRST

Arabidopsis Description

CEL3Endoglucanase [Source:UniProtKB/TrEMBL;Acc:Q0V7W1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.