Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 4
- vacuole 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G074700.1 | Wheat | extracellular, vacuole | 93.88 | 93.88 |
| TraesCS1B01G090700.1 | Wheat | extracellular, vacuole | 93.27 | 93.27 |
| TraesCS1A01G072300.1 | Wheat | vacuole | 93.88 | 93.12 |
| HORVU1Hr1G015550.1 | Barley | vacuole | 90.0 | 90.0 |
| KXG21209 | Sorghum | cytosol | 52.65 | 66.32 |
| Zm00001d035442_P001 | Maize | extracellular, vacuole | 54.9 | 64.51 |
| Os05t0129200-00 | Rice | endoplasmic reticulum, extracellular, vacuole | 66.53 | 63.67 |
| GSMUA_Achr6P15630_001 | Banana | extracellular, vacuole | 53.06 | 57.91 |
| VIT_13s0067g01200.t01 | Wine grape | extracellular, vacuole | 55.71 | 56.88 |
| VIT_13s0067g01190.t01 | Wine grape | extracellular, vacuole | 55.31 | 56.11 |
| PGSC0003DMT400069884 | Potato | extracellular, vacuole | 54.69 | 55.95 |
| Bra000354.1-P | Field mustard | extracellular, plastid, vacuole | 53.88 | 55.46 |
| CDX83426 | Canola | extracellular, plastid, vacuole | 53.88 | 55.11 |
| AT2G44550.1 | Thale cress | extracellular, plasma membrane, vacuole | 54.9 | 54.9 |
| Bra004846.1-P | Field mustard | nucleus | 52.65 | 54.89 |
| AT2G44540.1 | Thale cress | vacuole | 54.49 | 54.38 |
| Solyc05g052530.1.1 | Tomato | extracellular | 53.67 | 54.12 |
| AT2G44560.1 | Thale cress | extracellular, vacuole | 53.67 | 53.56 |
| AT2G44570.1 | Thale cress | extracellular | 53.06 | 52.85 |
| KRG89135 | Soybean | extracellular | 52.24 | 52.78 |
| CDX74668 | Canola | extracellular | 53.06 | 52.74 |
| CDX74666 | Canola | vacuole | 51.84 | 51.94 |
| CDY47674 | Canola | extracellular, vacuole | 52.24 | 51.93 |
| CDX95605 | Canola | extracellular, vacuole | 52.65 | 51.7 |
| Bra004845.1-P | Field mustard | extracellular | 51.43 | 51.53 |
| CDY47675 | Canola | vacuole | 51.22 | 51.33 |
| CDX74667 | Canola | extracellular, vacuole | 45.31 | 51.27 |
| CDX74664 | Canola | extracellular, vacuole | 50.2 | 50.31 |
| TraesCS7A01G317700.1 | Wheat | extracellular | 50.2 | 49.8 |
| Bra004844.1-P | Field mustard | extracellular, vacuole | 49.59 | 49.69 |
| TraesCS5A01G172100.1 | Wheat | extracellular, vacuole | 50.41 | 49.5 |
| TraesCS7A01G144500.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 48.37 | 46.02 |
| TraesCS7A01G144700.1 | Wheat | vacuole | 48.57 | 45.95 |
| TraesCS6A01G122100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 49.39 | 45.75 |
| TraesCS5A01G172200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 49.39 | 45.66 |
| TraesCS5A01G317400.1 | Wheat | plastid | 47.14 | 45.29 |
| TraesCS7A01G144400.1 | Wheat | cytosol, vacuole | 38.57 | 45.22 |
| TraesCS1A01G360700.3 | Wheat | extracellular, vacuole | 48.16 | 44.78 |
| TraesCS5A01G202600.1 | Wheat | vacuole | 48.98 | 44.78 |
| TraesCS6A01G312400.1 | Wheat | vacuole | 48.57 | 44.16 |
| TraesCS7A01G204500.1 | Wheat | extracellular | 44.9 | 43.74 |
| TraesCS1A01G088700.1 | Wheat | extracellular | 45.1 | 43.68 |
| TraesCS6A01G295300.1 | Wheat | extracellular | 44.08 | 43.55 |
| TraesCS6A01G093200.1 | Wheat | golgi | 44.08 | 43.46 |
| TraesCS2A01G310200.1 | Wheat | vacuole | 42.45 | 41.19 |
| TraesCS7A01G197900.1 | Wheat | extracellular, vacuole | 48.16 | 40.48 |
| TraesCS1A01G389300.1 | Wheat | extracellular, vacuole | 51.22 | 40.42 |
| TraesCS6A01G337300.1 | Wheat | mitochondrion | 40.82 | 39.45 |
| TraesCS3A01G144600.1 | Wheat | extracellular, vacuole | 50.41 | 39.21 |
| TraesCS2A01G556300.1 | Wheat | vacuole | 48.78 | 37.05 |
Protein Annotations
| KEGG:00500+3.2.1.4 | Gene3D:1.50.10.10 | MapMan:35.1 | InterPro:6-hairpin_glycosidase_sf | InterPro:6hp_glycosidase-like_sf | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 |
| InterPro:Glyco_hydro_9 | InterPro:Glyco_hydro_9_His_AS | InterPro:IPR012341 | PFAM:PF00759 | ScanProsite:PS00592 | PFscan:PS51257 |
| PANTHER:PTHR22298 | PANTHER:PTHR22298:SF12 | SUPFAM:SSF48208 | SignalP:SignalP-noTM | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS1A01G072100 |
| EnsemblPlants:TraesCS1A01G072100.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:54458948..54461026
Molecular Weight (calculated)
53346.3 Da
IEP (calculated)
9.090
GRAVY (calculated)
-0.238
Length
490 amino acids
Sequence
(BLAST)
(BLAST)
001: MVARARVLLV AAVVWFLATT ACQAAQRDYA TALTKSLLYF EAQRSGKLPP TRRVQWRGDS ALKDGADHGV DLIGGYYDSG DNVKFGFPMA FTVTMLSWSV
101: VEHRDRLAAA GELSHALQAV RWGADYLAKA HAHPDVLYVN VGDGDSDHAC WERPEDMDTP RRAYVVNATH PGSDVAAETA AALAAASVAF TGPRGDPRYA
201: STLLKHAKQL FQFAKNHRGL YQNSIPSARS FYSSSGDEDE LLWAAVWLYI ATGHQEYKAY IAGTNNVGGV PQSLSWDDKF VGAQALVAKL ILQGKLANSG
301: RHAEMRSNVE SFLCNVVQHG DGRSGRLTPG GMLYLQPWSN LQDVTTAMFV LVMHADHLAA ARASLQCGGV RLPPAQLVSF ARSQVDYILG KNPMKMSYMV
401: GVGKRYPLQP HHRGSSLPSI RKYPGKISCG KGAEYFHRSA PNLNVIDGAI VGGPDNNDHY DDSRGNYRQG EPSTYTVAPI VGVLARLLRN
101: VEHRDRLAAA GELSHALQAV RWGADYLAKA HAHPDVLYVN VGDGDSDHAC WERPEDMDTP RRAYVVNATH PGSDVAAETA AALAAASVAF TGPRGDPRYA
201: STLLKHAKQL FQFAKNHRGL YQNSIPSARS FYSSSGDEDE LLWAAVWLYI ATGHQEYKAY IAGTNNVGGV PQSLSWDDKF VGAQALVAKL ILQGKLANSG
301: RHAEMRSNVE SFLCNVVQHG DGRSGRLTPG GMLYLQPWSN LQDVTTAMFV LVMHADHLAA ARASLQCGGV RLPPAQLVSF ARSQVDYILG KNPMKMSYMV
401: GVGKRYPLQP HHRGSSLPSI RKYPGKISCG KGAEYFHRSA PNLNVIDGAI VGGPDNNDHY DDSRGNYRQG EPSTYTVAPI VGVLARLLRN
001: MSCISSQCFI TIKSICIVLL LSITCGAVSA NSNYGEALTK SLLYFEAQRS GKLPLDQRVI WRGDSALRDG SDAHVDLTGG YYDAGDNMKF GFPLAFTTTM
101: LAWSSVEMES QLKAHQEHGN TLAALRWATD YLIKAHPEPN VLYGQVGDAN LDHACWMRPE DMTTPRPSYR IDPQHPGADL AGETAAAMAA ASLAFAPSDS
201: AYAKTLISHA KELFEFAKDY PGVYHNSIPN AGGFYPSSGY EDELLWAAAW LHRATGDQTY LDHLTQASNS GGARSVFAWD DKFLGAQVLV AKLVFEGKVK
301: NEGKMIEYKS MAEQFICNCA QKGFNNVKKT PGGLLWFLPW DNLQYTATAS FALATYAKYL EAAQTSIQCP NGDVLQASDL LNLARAQVDY ILGSNPKKMS
401: YMVGYGTNYP KRPHHRGASI VSIKNDPKPV TCNGGFEAWY NNPKPNPNLL VGAIVGGPDE YDAYGDERSD FQHGEPDTVT VAPLLGVLAA IA
101: LAWSSVEMES QLKAHQEHGN TLAALRWATD YLIKAHPEPN VLYGQVGDAN LDHACWMRPE DMTTPRPSYR IDPQHPGADL AGETAAAMAA ASLAFAPSDS
201: AYAKTLISHA KELFEFAKDY PGVYHNSIPN AGGFYPSSGY EDELLWAAAW LHRATGDQTY LDHLTQASNS GGARSVFAWD DKFLGAQVLV AKLVFEGKVK
301: NEGKMIEYKS MAEQFICNCA QKGFNNVKKT PGGLLWFLPW DNLQYTATAS FALATYAKYL EAAQTSIQCP NGDVLQASDL LNLARAQVDY ILGSNPKKMS
401: YMVGYGTNYP KRPHHRGASI VSIKNDPKPV TCNGGFEAWY NNPKPNPNLL VGAIVGGPDE YDAYGDERSD FQHGEPDTVT VAPLLGVLAA IA
Arabidopsis Description
AtGH9B12Endoglucanase 15 [Source:UniProtKB/Swiss-Prot;Acc:O80497]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.