Factsheet for TraesCS6A01G122100.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G150300.1	Wheat	endoplasmic reticulum, extracellular, vacuole	98.68	98.68
TraesCS6D01G112100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	98.49	98.49
HORVU6Hr1G022270.2	Barley	mitochondrion	90.36	87.39
Os02t0151300-01	Rice	endoplasmic reticulum, extracellular, vacuole	81.47	80.71
Zm00001d015292_P001	Maize	endoplasmic reticulum, extracellular, vacuole	78.07	78.52
EES06282	Sorghum	extracellular, vacuole	76.94	76.07
GSMUA_Achr2P05330_001	Banana	vacuole	58.79	64.79
GSMUA_Achr3P28200_001	Banana	endoplasmic reticulum, golgi, vacuole	55.77	64.27
VIT_12s0059g01250.t01	Wine grape	extracellular, vacuole	62.0	62.96
TraesCS6A01G312400.1	Wheat	vacuole	63.89	62.71
Solyc07g049300.2.1	Tomato	extracellular, vacuole	59.17	62.23
PGSC0003DMT400001781	Potato	extracellular, vacuole	58.98	62.03
AT2G32990.1	Thale cress	extracellular, vacuole	61.44	61.9
CDY19428	Canola	vacuole	60.87	61.69
CDY17123	Canola	vacuole	60.68	61.49
TraesCS7A01G144400.1	Wheat	cytosol, vacuole	48.58	61.48
TraesCS7A01G144700.1	Wheat	vacuole	60.11	61.39
TraesCS7A01G144500.1	Wheat	endoplasmic reticulum, extracellular, vacuole	59.74	61.36
Bra005536.1-P	Field mustard	vacuole	60.49	61.3
GSMUA_Achr8P25280_001	Banana	endoplasmic reticulum, extracellular, vacuole	55.39	61.04
CDY23776	Canola	vacuole	60.49	60.84
CDY19174	Canola	vacuole	60.49	60.72
KRH73374	Soybean	vacuole	60.11	60.69
KRH14764	Soybean	cytosol, nucleus, vacuole	46.31	60.34
Bra021821.1-P	Field mustard	vacuole	57.28	59.53
TraesCS5A01G202600.1	Wheat	vacuole	60.3	59.51
TraesCS7A01G197900.1	Wheat	extracellular, vacuole	63.52	57.63
TraesCS1A01G072100.1	Wheat	nucleus	45.75	49.39
TraesCS1A01G072300.1	Wheat	vacuole	45.37	48.58
TraesCS7A01G317700.1	Wheat	extracellular	43.86	46.96
TraesCS1A01G389300.1	Wheat	extracellular, vacuole	54.25	46.22
TraesCS5A01G172100.1	Wheat	extracellular, vacuole	42.91	45.49
TraesCS6A01G295300.1	Wheat	extracellular	42.16	44.96
TraesCS3A01G144600.1	Wheat	extracellular, vacuole	53.5	44.92
TraesCS1A01G360700.3	Wheat	extracellular, vacuole	43.86	44.02
TraesCS7A01G204500.1	Wheat	extracellular	41.78	43.94
TraesCS1A01G088700.1	Wheat	extracellular	41.78	43.68
TraesCS6A01G093200.1	Wheat	golgi	40.45	43.06
TraesCS5A01G172200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	43.1	43.02
TraesCS2A01G310200.1	Wheat	vacuole	40.64	42.57
TraesCS2A01G556300.1	Wheat	vacuole	51.61	42.33
TraesCS5A01G317400.1	Wheat	plastid	40.64	42.16
TraesCS6A01G337300.1	Wheat	mitochondrion	38.56	40.24
GSMUA_Achr4P12980_001	Banana	extracellular, vacuole	57.66	37.42

Protein Annotations

EnsemblPlants:TraesCS6A01G122100.1	EnsemblPlantsGene:TraesCS6A01G122100	Gene3D:1.50.10.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:6-hairpin_glycosidase_sf	InterPro:6hp_glycosidase-like_sf
InterPro:Glyco_hydro_9	InterPro:IPR012341	KEGG:00500+3.2.1.4	PANTHER:PTHR22298	PANTHER:PTHR22298:SF53	PFAM:PF00759
SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF48208	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr6A:+:94226922..94231112

Molecular Weight (calculated)

58235.9 Da

IEP (calculated)

5.000

GRAVY (calculated)

-0.309

Length

529 amino acids

Sequence
(BLAST)

001: MSDVTGRFVL AAAVVAVSLV MASAARHDYG DALSKSLLYF ESQRSGRLPY NQRVRWRGHS GLTDGLEQGV DLVGGYYDAG DHVKFGLPMA FTVTMLSWAV
101: LEYGDQIAAA GEGAHALQSI KWGTDYFIKA HTAPNELWTQ VGDGDSDHYC WQRPEDMTTS RRAYKVDAEH PGSEVAAETA AAMAAASIVF RRAGDAHYAH
201: LLLHHAQQLF EFADKYRGRY DASVRVVKSY YPSASGYNDE LLWAALWLHR ATGGREYLDY AVANADDFGG TGWGVSEFSW DIKYPGLQVL ASKLLLEEKD
301: LSSEYRAVLE KYRAKAEFYV CSNMNKNPGG AARNAPRTPA GLIFIRPWNN LQYVTNAVFL LTVHSDLLAA LGEPLRCTVD EDADTSDTGG ETAADVVVRA
401: EEVLAFARAQ ADYILGTNPM GTSYLVGYSD KYPRRVHHRA ASTASFADEK GFIGCAQGFD SWYSAGEENP HDLVGAVVGG PDGEDRFNDQ RGAYMQTEAC
501: TYNTAPMVGV FSRLMELDAE ERLREQRDL

Best Arabidopsis Sequence Match ( AT1G64390.1 )
(BLAST)

001: MEKFAPVAAL LLLLLCFPVA FSGHDYGQAL SKSLLFFEAQ RSGVLPRNQR VTWRSHSGLT DGKSSGVNLV GGYYDAGDNV KFGLPMAFTV TMMAWSVIEY
101: GNQLQANGEL GNSIDAIKWG TDYFIKAHPE PNVLYGEVGD GNTDHYCWQR PEEMTTDRKA YRIDPSNPGS DLAGETAAAM AAASIVFRRS NPVYSRLLLT
201: HAYQLFDFAD KYRGKYDSSI TVAQKYYRSV SGYNDELLWA AAWLYQASNN QFYLDYLGRN GDAMGGTGWS MTEFGWDVKY AGVQTLVAKF LMQGKAGRHA
301: PVFRKYQEKA DSFMCSLLGK SSRNIQKTPG GLIFRQRWNN MQFVTSASFL TTVYSDYLTS SRSNLRCAAG NVAPSQLLSF AKSQVDYILG DNPRATSYMV
401: GYGNNFPQRV HHRGSSIVSV KVDRTFVTCR GGYATWFSRK GSDPNLLTGA IVGGPDAYDN FADRRDNYEQ TEPATYNNAP LLGVLARLSS GHSGYSQFLP
501: VVPAPVVRRP MPIRRPKVTT PVRASGPVAI VQKITSSWVS KGRTYYRYST TVINKSSRPL KSLNLSIKNL YGPIWGLSRS GNSFGLPSWM HSLPSGKSLE
601: FVYIHSTTPA NVAVSSYTLA

Arabidopsis Description

AtGH9C2Endoglucanase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q42059]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.