Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04845 | Canola | nucleus | 82.89 | 86.3 |
| AT5G02220.1 | Thale cress | cytosol, nucleus, plastid | 65.79 | 69.44 |
| CDY10460 | Canola | nucleus | 63.16 | 65.75 |
| CDY40340 | Canola | nucleus | 63.16 | 65.75 |
| KRH49124 | Soybean | cytosol, nucleus, plastid | 44.74 | 52.31 |
| GSMUA_Achr6P17910_001 | Banana | nucleus | 50.0 | 49.35 |
| TraesCS5B01G495400.1 | Wheat | nucleus | 46.05 | 42.17 |
| TraesCS5D01G495900.1 | Wheat | cytosol | 46.05 | 39.33 |
| TraesCS5A01G482300.1 | Wheat | nucleus | 46.05 | 39.33 |
| Os03t0822400-01 | Rice | nucleus | 46.05 | 39.33 |
| GSMUA_Achr2P16400_001 | Banana | cytosol | 44.74 | 39.08 |
| HORVU3Hr1G086110.1 | Barley | cytosol | 39.47 | 37.5 |
| TraesCS3B01G393400.1 | Wheat | cytosol | 39.47 | 36.59 |
| CDY10280 | Canola | cytosol | 40.79 | 36.47 |
| TraesCS3D01G354800.1 | Wheat | cytosol | 39.47 | 36.14 |
| TraesCS3A01G361000.1 | Wheat | cytosol | 38.16 | 35.8 |
| EER93180 | Sorghum | cytosol | 43.42 | 35.48 |
| CDY71405 | Canola | cytosol | 39.47 | 35.29 |
| CDY06711 | Canola | cytosol | 39.47 | 35.29 |
| Zm00001d042902_P001 | Maize | cytosol | 39.47 | 33.33 |
| CDY15615 | Canola | cytosol | 36.84 | 32.94 |
| Os01t0843700-01 | Rice | cytosol | 39.47 | 32.26 |
| HORVU5Hr1G113790.1 | Barley | cytosol, nucleus | 46.05 | 31.82 |
| Zm00001d012956_P001 | Maize | cytosol | 39.47 | 31.58 |
| HORVU5Hr1G113780.1 | Barley | cytosol, nucleus | 46.05 | 30.97 |
| CDX86476 | Canola | cytosol | 27.63 | 26.92 |
| KXG33680 | Sorghum | mitochondrion | 39.47 | 24.79 |
Protein Annotations
| EnsemblPlants:CDY48103 | EnsemblPlantsGene:GSBRNA2T00088799001 | PANTHER:PTHR33142 | PANTHER:PTHR33142:SF15 | ProteinID:CDY48103 | ProteinID:CDY48103.1 |
| SEG:seg | UniParc:UPI0004EC87AB | UniProt:A0A078IG41 | MapMan:13.1.1.3.2 | : | : |
Description
BnaC02g03600DBnaC02g03600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IG41]
Coordinates
chrLK032754:+:51049..51771
Molecular Weight (calculated)
8774.4 Da
IEP (calculated)
7.294
GRAVY (calculated)
-1.167
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MDSKRDDLHE KMEEDECTTP RSGEHRIPVS SVCPPPPRKK PKVVRNRDPP RNGYFQPPDL EDLFCAQLRR EACASI
1: MEVVERKTEM AEEGCTTPRS TMYRIPVASV CPPPPRKKLM VVRKRDPPRN GYFQPPDLET LFYAQPRREA CA
Arabidopsis Description
SMR4Cyclin-dependent protein kinase inhibitor SMR4 [Source:UniProtKB/Swiss-Prot;Acc:Q1JPP8]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.