CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER95568
EER99370
EES04403
EES12225
KXG20919
KXG37426
KXG38992
KXG40187
KXG40336

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07500.1	EES12225	AT1G71380.1	20706207
AT1G07500.1	KXG40187	AT2G27970.1	20706207
AT1G07500.1	EES04403	AT3G48750.1	20706207
AT1G07500.1	KXG40336	AT3G48750.1	20706207
AT5G02220.1	KXG37426	AT1G56000.1	20706207
AT5G02220.1	EES12225	AT1G71380.1	20706207
AT5G02220.1	KXG40187	AT2G27960.1	20706207
AT5G02220.1	EER95568	AT3G45970.1	20706207
AT5G02220.1	EER99370	AT3G45970.1	20706207
AT5G02220.1	KXG20919	AT3G45970.1	20706207
AT5G02220.1	KXG38992	AT3G45970.1	20706207
AT5G02220.1	EES04403	AT3G48750.1	20706207
AT5G02220.1	KXG40336	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042902_P001	Maize	cytosol	61.98	83.33
Os01t0843700-01	Rice	cytosol	61.98	80.65
HORVU3Hr1G086110.1	Barley	cytosol	51.24	77.5
TraesCS3B01G393400.1	Wheat	cytosol	52.07	76.83
TraesCS3D01G354800.1	Wheat	cytosol	52.07	75.9
TraesCS3A01G361000.1	Wheat	cytosol	49.59	74.07
GSMUA_Achr6P17910_001	Banana	nucleus	33.88	53.25
GSMUA_Achr2P16400_001	Banana	cytosol	36.36	50.57
VIT_13s0019g01870.t01	Wine grape	cytosol	28.1	48.57
EER93180	Sorghum	cytosol	36.36	47.31
KRH73050	Soybean	cytosol	27.27	47.14
KRH49124	Soybean	cytosol, nucleus, plastid	24.79	46.15
KRH15086	Soybean	cytosol	25.62	45.59
CDY10460	Canola	nucleus	26.45	43.84
Bra009606.1-P	Field mustard	nucleus	26.45	43.84
CDY40340	Canola	nucleus	26.45	43.84
AT5G02220.1	Thale cress	cytosol, nucleus, plastid	25.62	43.06
CDY71405	Canola	cytosol	29.75	42.35
Bra015583.1-P	Field mustard	cytosol	29.75	42.35
CDY10280	Canola	cytosol	28.93	41.18
CDY06711	Canola	cytosol	28.93	41.18
CDY04845	Canola	nucleus	24.79	41.1
Bra028880.1-P	Field mustard	nucleus	24.79	41.1
CDY48103	Canola	nucleus	24.79	39.47
PGSC0003DMT400070004	Potato	nucleus, peroxisome, plastid	23.97	39.19
Bra030687.1-P	Field mustard	cytosol	27.27	38.82
CDY15615	Canola	cytosol	27.27	38.82
AT1G07500.1	Thale cress	cytosol	25.62	37.8
Solyc05g053050.1.1	Tomato	cytosol, nucleus, peroxisome	21.49	35.14
Solyc06g076310.1.1	Tomato	cytosol, nucleus, plastid	23.97	34.94
PGSC0003DMT400077975	Potato	cytosol	23.97	34.12
CDX86476	Canola	cytosol	21.49	33.33

Protein Annotations

EnsemblPlants:KXG33680	EnsemblPlantsGene:SORBI_3003G353100	PANTHER:PTHR33142	PANTHER:PTHR33142:SF16	ProteinID:KXG33680	ProteinID:KXG33680.1
SEG:seg	UniParc:UPI00081AEA38	UniProt:A0A1B6Q6Z1	MapMan:13.1.1.3.2	:	:

Description

hypothetical protein

Coordinates

chr3:+:67204440..67205395

Molecular Weight (calculated)

12863.7 Da

IEP (calculated)

11.018

GRAVY (calculated)

-0.540

Length

121 amino acids

Sequence
(BLAST)

001: MLRRPRLFPP KSRVSKKGKQ ISSSPRKINL LAMESVETKA AAAAAAAGAK GGGGGYGCCG WETPKREECR IPATLPCPAA PRKAVPDFGK RRSPPKNGYF
101: QPPDLEALFA LAPRRQASSC A

Best Arabidopsis Sequence Match ( AT1G07500.1 )
(BLAST)

1: MEEKNYDDGD TVTVDDDYQM GCTTPTRDDC RIPAYPPCPP PVRRKRSLLG FGKKREPPKK GYFQPPDLDL FFSVVAASQA AT

Arabidopsis Description

SMR5Cyclin-dependent protein kinase inhibitor SMR5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNX4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.