Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX69600 | |
| CDX69832 | nucleus |
| CDX70523 | endoplasmic reticulum |
| CDX70546 | |
| CDX72643 | nucleus |
| CDX76164 | |
| CDX77932 | nucleus |
| CDX78541 | endoplasmic reticulum |
| CDX78564 | |
| CDX79470 | nucleus, nucleus |
| CDX82309 | nucleus |
| CDX84726 | nucleus, nucleus |
| CDX87588 | |
| CDX88294 | |
| CDX90892 | nucleus |
| CDX92305 | nucleus |
| CDX93038 | nucleus |
| CDX93296 | nucleus |
| CDX96319 | |
| CDX97009 | nucleus |
| CDX99264 | nucleus |
| CDY02078 | nucleus |
| CDY03686 | |
| CDY03687 | |
| CDY10149 | |
| CDY10155 | |
| CDY10634 | |
| CDY12181 | nucleus, nucleus |
| CDY13189 | |
| CDY17793 | nucleus |
| CDY19160 | nucleus, nucleus |
| CDY21951 | nucleus |
| CDY22116 | nucleus |
| CDY22987 | nucleus |
| CDY23003 | nucleus |
| CDY23793 | nucleus, nucleus |
| CDY24145 | |
| CDY29570 | nucleus |
| CDY36916 | |
| CDY37406 | |
| CDY37408 | |
| CDY37936 | |
| CDY37939 | |
| CDY46075 | nucleus, nucleus |
| CDY51319 | |
| CDY58407 | |
| CDY59640 | nucleus, nucleus |
| CDY63966 | nucleus, nucleus |
| CDY66787 | |
| CDY71628 | nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034380.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDX77145 | Canola | cytosol | 98.77 | 98.77 |
| AT2G27970.1 | Thale cress | nucleus | 83.95 | 81.93 |
| KRH25124 | Soybean | cytosol | 81.48 | 75.0 |
| KRH30550 | Soybean | cytosol | 81.48 | 75.0 |
| CDX76267 | Canola | cytosol | 80.25 | 73.86 |
| PGSC0003DMT400001218 | Potato | cytosol | 80.25 | 73.86 |
| VIT_06s0061g00810.t01 | Wine grape | cytosol | 80.25 | 73.86 |
| PGSC0003DMT400048460 | Potato | cytosol | 79.01 | 72.73 |
| CDY57739 | Canola | cytosol | 80.25 | 72.22 |
| Os03t0146300-01 | Rice | nucleus | 80.25 | 72.22 |
| TraesCS4A01G410900.1 | Wheat | nucleus | 79.01 | 71.11 |
| TraesCS4B01G311000.1 | Wheat | nucleus | 79.01 | 71.11 |
| TraesCS4D01G308900.1 | Wheat | nucleus | 79.01 | 71.11 |
| GSMUA_Achr2P11710_001 | Banana | nucleus | 80.25 | 69.89 |
| GSMUA_Achr2P11750_001 | Banana | cytosol | 80.25 | 48.87 |
| HORVU4Hr1G079310.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 79.01 | 47.76 |
Protein Annotations
| MapMan:13.1.1.2.8 | Gene3D:3.30.170.10 | GO:A0A078GZB4 | UniProt:A0A078GZB4 | EnsemblPlants:CDY30517 | ProteinID:CDY30517 |
| ProteinID:CDY30517.1 | InterPro:Cyclin-dep_kinase_reg-sub | InterPro:Cyclin-dep_kinase_reg-sub_sf | GO:GO:0003674 | GO:GO:0006464 | GO:GO:0007049 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016538 | GO:GO:0019538 | GO:GO:0030234 |
| GO:GO:0045859 | GO:GO:0051301 | EnsemblPlantsGene:GSBRNA2T00045236001 | InterPro:IPR036858 | PFAM:PF01111 | PRINTS:PR00296 |
| ScanProsite:PS00944 | PANTHER:PTHR23415 | PANTHER:PTHR23415:SF29 | SMART:SM01084 | SUPFAM:SSF55637 | UniParc:UPI0002543C4F |
Description
BnaA04g16160DCyclin-dependent kinases regulatory subunit [Source:UniProtKB/TrEMBL;Acc:A0A078GZB4]
Coordinates
chrLK032254:+:200630..201443
Molecular Weight (calculated)
9744.8 Da
IEP (calculated)
9.717
GRAVY (calculated)
-0.695
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: MARIEYSDKY FDDTYEYRHV VLPPEVAKLL PKNRILAESE WRAIGVQQSR GWVHYAIHRP EPHIMLFRRT LNYQPPNPIP K
1: MGQIQYSDKY FDDTFEYRHV VLPPEVAKLL PKNRILSESE WRAIGVQQSR GWVHYAIHRP EPHIMLFRRP LNYQQEHQAQ IAK
Arabidopsis Description
CKS2Cyclin-dependent kinases regulatory subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.