Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX67853 | |
| CDX68497 | |
| CDX68573 | nucleus |
| CDX69832 | nucleus |
| CDX72169 | |
| CDX72452 | |
| CDX72453 | nucleus |
| CDX72643 | nucleus |
| CDX72732 | |
| CDX74565 | |
| CDX75404 | |
| CDX75405 | nucleus |
| CDX76264 | |
| CDX76265 | nucleus |
| CDX77145 | |
| CDX80722 | |
| CDX82211 | |
| CDX83047 | |
| CDX83112 | nucleus |
| CDX83379 | |
| CDX87018 | |
| CDX89414 | |
| CDX90298 | |
| CDX90891 | |
| CDX90892 | nucleus |
| CDX92717 | |
| CDX94441 | |
| CDX95682 | |
| CDX97009 | nucleus |
| CDX98292 | |
| CDY01711 | |
| CDY02095 | nucleus |
| CDY02587 | |
| CDY04295 | |
| CDY05870 | |
| CDY07477 | |
| CDY08267 | |
| CDY09484 | |
| CDY12108 | |
| CDY14051 | |
| CDY16358 | |
| CDY17951 | |
| CDY21951 | nucleus |
| CDY21952 | |
| CDY22116 | nucleus |
| CDY22118 | |
| CDY22138 | |
| CDY22407 | |
| CDY23022 | nucleus |
| CDY26081 | |
| CDY27241 | |
| CDY27534 | |
| CDY29570 | nucleus |
| CDY30517 | |
| CDY30752 | |
| CDY31089 | |
| CDY31092 | |
| CDY31791 | |
| CDY31792 | |
| CDY32179 | |
| CDY32413 | |
| CDY33397 | |
| CDY34315 | |
| CDY35481 | |
| CDY37090 | |
| CDY37308 | |
| CDY39255 | |
| CDY40826 | |
| CDY42008 | |
| CDY45683 | |
| CDY48943 | |
| CDY49277 | |
| CDY49278 | nucleus |
| CDY50198 | |
| CDY52333 | |
| CDY52363 | |
| CDY54086 | |
| CDY55173 | |
| CDY57741 | nucleus |
| CDY57743 | |
| CDY65304 | |
| CDY65406 | |
| CDY66197 | |
| CDY67155 | |
| CDY67496 | |
| CDY69708 | nucleus |
| CDY70356 | |
| CDY71925 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012894.1-P | Field mustard | nucleus | 98.11 | 98.11 |
| CDY23003 | Canola | nucleus | 85.85 | 83.87 |
| AT3G50630.1 | Thale cress | nucleus | 67.45 | 68.42 |
| CDX93296 | Canola | nucleus | 50.0 | 64.24 |
| CDX77932 | Canola | nucleus | 49.53 | 63.64 |
| CDY17793 | Canola | nucleus | 48.58 | 61.68 |
Protein Annotations
| MapMan:13.1.1.3.1 | Gene3D:4.10.365.10 | GO:A0A078ERD2 | InterPro:CDI | EnsemblPlants:CDY02078 | ProteinID:CDY02078 |
| ProteinID:CDY02078.1 | GO:GO:0003674 | GO:GO:0004861 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0007049 | GO:GO:0007050 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030234 |
| EnsemblPlantsGene:GSBRNA2T00113453001 | PFAM:PF02234 | PIRSF:PIRSF017811 | PANTHER:PTHR10265 | PANTHER:PTHR10265:SF39 | UniParc:UPI0004EDF2DD |
| SEG:seg | : | : | : | : | : |
Description
BnaA03g40890D
Coordinates
chrLK031932:-:4862..6022
Molecular Weight (calculated)
24446.4 Da
IEP (calculated)
4.903
GRAVY (calculated)
-0.994
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGNVSVRG RRRELDVSEE NEANTTPKRR KLEVDVESRI VFSPCVQSTS RGGTVVRNSA GASETSVVIV RRRESPVDEQ CQIPSSVSCC SSNGSEEKTK
101: RRIEFVDLEE DDDGDLDQTV TSWIYDNFNN TRRDMQHEDS TAMEVQEVEC RRRLKMKKSR ETVKEAELED FFQAAEKDVR NNKMLECSWK YNFDFKKDEP
201: LGGRYEWVKL NP
101: RRIEFVDLEE DDDGDLDQTV TSWIYDNFNN TRRDMQHEDS TAMEVQEVEC RRRLKMKKSR ETVKEAELED FFQAAEKDVR NNKMLECSWK YNFDFKKDEP
201: LGGRYEWVKL NP
001: MAAVRRRERD VVEENGVTTT TVKRRKMEEE VDLVESRIIL SPCVQATNRG GIVARNSAGA SETSVVIVRR RDSPPVEEQC QIEEEDSSVS CCSTSEEKSK
101: RRIEFVDLEE NNGDDRETET SWIYDDLNKS EESMNMDSSS VAVEDVESRR RLRKSLHETV KEAELEDFFQ VAEKDLRNKL LECSMKYNFD FEKDEPLGGG
201: RYEWVKLNP
101: RRIEFVDLEE NNGDDRETET SWIYDDLNKS EESMNMDSSS VAVEDVESRR RLRKSLHETV KEAELEDFFQ VAEKDLRNKL LECSMKYNFD FEKDEPLGGG
201: RYEWVKLNP
Arabidopsis Description
KRP2Cyclin-dependent kinase inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCR2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.