Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX67853 | |
| CDX68497 | |
| CDX68573 | nucleus |
| CDX69832 | nucleus |
| CDX72169 | |
| CDX72452 | |
| CDX72453 | nucleus |
| CDX72643 | nucleus |
| CDX72732 | |
| CDX74565 | |
| CDX75404 | |
| CDX75405 | nucleus |
| CDX76264 | |
| CDX76265 | nucleus |
| CDX77145 | |
| CDX80722 | |
| CDX82211 | |
| CDX83047 | |
| CDX83112 | nucleus |
| CDX83379 | |
| CDX87018 | |
| CDX89414 | |
| CDX90298 | |
| CDX90891 | |
| CDX90892 | nucleus |
| CDX92717 | |
| CDX94441 | |
| CDX95682 | |
| CDX97009 | nucleus |
| CDX98292 | |
| CDY01711 | |
| CDY02095 | nucleus |
| CDY02587 | |
| CDY04295 | |
| CDY05870 | |
| CDY07477 | |
| CDY08267 | |
| CDY09484 | |
| CDY12108 | |
| CDY14051 | |
| CDY16358 | |
| CDY17951 | |
| CDY21951 | nucleus |
| CDY21952 | |
| CDY22116 | nucleus |
| CDY22118 | |
| CDY22138 | |
| CDY22407 | |
| CDY23022 | nucleus |
| CDY26081 | |
| CDY27241 | |
| CDY27534 | |
| CDY29570 | nucleus |
| CDY30517 | |
| CDY30752 | |
| CDY31089 | |
| CDY31092 | |
| CDY31791 | |
| CDY31792 | |
| CDY32179 | |
| CDY32413 | |
| CDY33397 | |
| CDY34315 | |
| CDY35481 | |
| CDY37090 | |
| CDY37308 | |
| CDY39255 | |
| CDY40826 | |
| CDY42008 | |
| CDY45683 | |
| CDY48943 | |
| CDY49277 | |
| CDY49278 | nucleus |
| CDY50198 | |
| CDY52333 | |
| CDY52363 | |
| CDY54086 | |
| CDY55173 | |
| CDY57741 | nucleus |
| CDY57743 | |
| CDY65304 | |
| CDY65406 | |
| CDY66197 | |
| CDY67155 | |
| CDY67496 | |
| CDY69708 | nucleus |
| CDY70356 | |
| CDY71925 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77932 | Canola | nucleus | 97.58 | 97.58 |
| CDY17793 | Canola | nucleus | 94.55 | 93.41 |
| CDY02078 | Canola | nucleus | 64.24 | 50.0 |
| CDY23003 | Canola | nucleus | 65.45 | 49.77 |
| AT3G50630.1 | Thale cress | nucleus | 58.79 | 46.41 |
Protein Annotations
| EnsemblPlants:CDX93296 | EnsemblPlantsGene:GSBRNA2T00155267001 | Gene3D:4.10.365.10 | GO:A0A078DVI7 | GO:GO:0003674 | GO:GO:0004861 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007049 | GO:GO:0007050 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030234 | InterPro:CDI | PFAM:PF02234 | PIRSF:PIRSF017811 |
| ProteinID:CDX93296 | ProteinID:CDX93296.1 | SEG:seg | UniParc:UPI0004EED611 | MapMan:13.1.1.3.1 | : |
Description
BnaC04g46000D
Coordinates
chrLK031875:+:821879..822755
Molecular Weight (calculated)
19147.8 Da
IEP (calculated)
4.334
GRAVY (calculated)
-1.161
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAGEVGRRR EGETAEENEK TNVKRRKLEE EEESRVLILS QNPSSEYDLL DSALSSSSVS CCSSSEEKSK RRTDGGEFDQ TETSWIYYVN RRVPEEEESV
101: NEVESCRVNK QKRCETVKEA EIEDFFQAAE KDVRNNMLEC SSKYSFDFEK DEPLDGRYEW VKLNP
101: NEVESCRVNK QKRCETVKEA EIEDFFQAAE KDVRNNMLEC SSKYSFDFEK DEPLDGRYEW VKLNP
001: MAAVRRRERD VVEENGVTTT TVKRRKMEEE VDLVESRIIL SPCVQATNRG GIVARNSAGA SETSVVIVRR RDSPPVEEQC QIEEEDSSVS CCSTSEEKSK
101: RRIEFVDLEE NNGDDRETET SWIYDDLNKS EESMNMDSSS VAVEDVESRR RLRKSLHETV KEAELEDFFQ VAEKDLRNKL LECSMKYNFD FEKDEPLGGG
201: RYEWVKLNP
101: RRIEFVDLEE NNGDDRETET SWIYDDLNKS EESMNMDSSS VAVEDVESRR RLRKSLHETV KEAELEDFFQ VAEKDLRNKL LECSMKYNFD FEKDEPLGGG
201: RYEWVKLNP
Arabidopsis Description
KRP2Cyclin-dependent kinase inhibitor 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCR2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.