CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY42000
CDY42648

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03280.1	CDY42000	AT4G39710.1	12424338
AT4G03280.1	CDY42648	AT4G39710.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22118	Canola	plastid	99.13	99.13
Bra034200.1-P	Field mustard	plastid	98.7	98.7
CDY17951	Canola	plastid	89.18	89.18
AT4G03280.1	Thale cress	plastid	88.31	89.08
CDX90891	Canola	plastid	88.74	88.74
KRH22477	Soybean	nucleus, plastid	73.16	74.45
KRH26877	Soybean	plastid	72.73	74.01
Solyc12g005630.1.1	Tomato	plastid	73.59	73.59
PGSC0003DMT400035747	Potato	plastid	72.73	73.04
GSMUA_Achr9P24590_001	Banana	plastid	71.86	72.81
VIT_12s0134g00510.t01	Wine grape	plastid	67.97	69.47
Os07t0556200-01	Rice	plastid	67.53	69.33
EES19551	Sorghum	plastid	67.1	68.58
Zm00001d053432_P001	Maize	plastid	67.1	68.28
TraesCS2D01G214700.1	Wheat	plastid	64.94	67.57
Zm00001d016134_P002	Maize	plastid	65.8	67.26
TraesCS2A01G207900.1	Wheat	plastid	64.5	67.12
TraesCS2B01G234500.1	Wheat	plastid	64.5	67.12
HORVU2Hr1G041610.3	Barley	plastid	64.07	64.07
GSMUA_Achr10P...	Banana	plastid	57.58	61.86

Protein Annotations

KEGG:00195+1.10.9.1	MapMan:1.1.2.3	Gene3D:1.20.5.700	Gene3D:2.102.10.10	GO:A0A078GAB7	UniProt:A0A078GAB7
EnsemblPlants:CDY21952	ProteinID:CDY21952	ProteinID:CDY21952.1	InterPro:Cyt_b6-f_cplx_Fe-S_su	InterPro:Cyt_b6_f_Rieske	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009496	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016679	GO:GO:0022900	GO:GO:0042651
GO:GO:0045158	GO:GO:0051537	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00018282001	InterPro:IPR017941	InterPro:IPR036922
HAMAP:MF_01335	PFAM:PF00355	PFAM:PF08802	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134
PANTHER:PTHR10134:SF5	MetaCyc:PWY-101	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C
SUPFAM:SSF50022	TMHMM:TMhelix	UniParc:UPI0004EBC343	SEG:seg	:	:

Description

BnaC09g00580DCytochrome b6-f complex iron-sulfur subunit [Source:UniProtKB/TrEMBL;Acc:A0A078GAB7]

Coordinates

chrLK032126:+:290911..292797

Molecular Weight (calculated)

24565.7 Da

IEP (calculated)

8.487

GRAVY (calculated)

-0.058

Length

231 amino acids

Sequence
(BLAST)

001: MASSPISPAT QLGSSRSATM LAMMSRGMFV KPARTSHQMV RKEKIGLRIA CQATSIPAEN VPDMEKRKLL NLLLVGALSL PTGFMLVPYA TFFAPPGSGG
101: EGGGTPAKDA LGNDVIAAEW LKTHGAGDRT LTQGLKGDPT YLVVENDKTL ATYGINAVCT HLGCVVPWNK AENKFLCPCH GSQYNAQGRV VRGPAPLSLA
201: LAHADIDDGG KVVFVPWVET DFRTGDAPWW S

Best Arabidopsis Sequence Match ( AT4G03280.1 )
(BLAST)

001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS

Arabidopsis Description

PETCCytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.