Factsheet for Bra034200.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011839.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03280.1	Bra011839.1-P	AT4G39710.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22118	Canola	plastid	99.57	99.57
CDY21952	Canola	plastid	98.7	98.7
AT4G03280.1	Thale cress	plastid	89.18	89.96
Bra000837.1-P	Field mustard	plastid	89.61	89.61
KRH22477	Soybean	nucleus, plastid	73.59	74.89
Solyc12g005630.1.1	Tomato	plastid	74.46	74.46
KRH26877	Soybean	plastid	73.16	74.45
PGSC0003DMT400035747	Potato	plastid	73.59	73.91
GSMUA_Achr9P24590_001	Banana	plastid	72.29	73.25
VIT_12s0134g00510.t01	Wine grape	plastid	68.4	69.91
Os07t0556200-01	Rice	plastid	67.97	69.78
Zm00001d053432_P001	Maize	plastid	67.97	69.16
EES19551	Sorghum	plastid	67.53	69.03
TraesCS2D01G214700.1	Wheat	plastid	65.37	68.02
Zm00001d016134_P002	Maize	plastid	66.23	67.7
TraesCS2A01G207900.1	Wheat	plastid	64.94	67.57
TraesCS2B01G234500.1	Wheat	plastid	64.94	67.57
HORVU2Hr1G041610.3	Barley	plastid	64.5	64.5
GSMUA_Achr10P...	Banana	plastid	58.01	62.33

Protein Annotations

KEGG:00195+1.10.9.1	MapMan:1.1.2.3	Gene3D:1.20.5.700	Gene3D:2.102.10.10	EnsemblPlantsGene:Bra034200	EnsemblPlants:Bra034200.1
EnsemblPlants:Bra034200.1-P	InterPro:Cyt_b6-f_cplx_Fe-S_su	InterPro:Cyt_b6_f_Rieske	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009496	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0016679	GO:GO:0022900	GO:GO:0042651	GO:GO:0045158	GO:GO:0051537
GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922	UniProt:M4EZF7	HAMAP:MF_01335	PFAM:PF00355
PFAM:PF08802	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF5	InterPro:Rieske_2Fe-2S
InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	SUPFAM:SSF50022	TMHMM:TMhelix	UniParc:UPI0002543BE2
SEG:seg	:	:	:	:	:

Description

AT4G03280 (E=7e-110) PETC, PGR1 | PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C); electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II

Coordinates

chrA01:-:26981106..26982550

Molecular Weight (calculated)

24513.6 Da

IEP (calculated)

8.741

GRAVY (calculated)

-0.049

Length

231 amino acids

Sequence
(BLAST)

001: MASSPISPAT QLGSSRSATM FAMMSRGMFV KPARTSHQMV RKEKIGLRIA CQATSIPADN VPDMEKRKLL NLLLVGALSL PTGFMLVPYA TFFAPPGSGG
101: GGGGTPAKDA LGNDVIAAEW LKTHGAGDRT LTQGLKGDPT YLVVENDKTL ATYGINAVCT HLGCVVPWNK AENKFLCPCH GSQYNAQGRV VRGPAPLSLA
201: LAHADIDDGG KVVFVPWVET DFRTGDAPWW S

Best Arabidopsis Sequence Match ( AT4G03280.1 )
(BLAST)

001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS

Arabidopsis Description

PETCCytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.