Factsheet for Zm00001d016134_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 19688749
plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 19688749 doi

C Zörb, R Herbst, C Forreiter, S Schubert

Institute of Plant Nutrition (IFZ), Justus Liebig University Giessen, Giessen, Germany. czoerb@plantnutrition.uni-kiel.de

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018077_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03280.1	Zm00001d018077_P002	AT4G39710.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19551	Sorghum	plastid	95.13	95.13
Zm00001d053432_P001	Maize	plastid	95.13	94.71
Os07t0556200-01	Rice	plastid	85.4	85.78
TraesCS2D01G214700.1	Wheat	plastid	83.19	84.68
TraesCS2B01G234500.1	Wheat	plastid	83.19	84.68
TraesCS2A01G207900.1	Wheat	plastid	82.74	84.23
HORVU2Hr1G041610.3	Barley	plastid	78.76	77.06
VIT_03s0017g00940.t01	Wine grape	mitochondrion	65.49	76.29
GSMUA_Achr9P24590_001	Banana	plastid	73.89	73.25
VIT_19s0014g03850.t01	Wine grape	plastid	71.24	70.61
Solyc12g005630.1.1	Tomato	plastid	70.8	69.26
KRH22477	Soybean	nucleus, plastid	69.47	69.16
KRH26877	Soybean	plastid	69.47	69.16
PGSC0003DMT400035747	Potato	plastid	69.91	68.7
VIT_12s0134g00510.t01	Wine grape	plastid	67.7	67.7
AT4G03280.1	Thale cress	plastid	68.58	67.69
CDY17951	Canola	plastid	68.58	67.1
CDX90891	Canola	plastid	68.58	67.1
Bra000837.1-P	Field mustard	plastid	68.58	67.1
CDY22118	Canola	plastid	67.7	66.23
Bra034200.1-P	Field mustard	plastid	67.7	66.23
GSMUA_Achr10P...	Banana	plastid	62.83	66.05
CDY21952	Canola	plastid	67.26	65.8

Protein Annotations

KEGG:00195+1.10.9.1	MapMan:1.1.2.3	Gene3D:1.20.5.700	EntrezGene:100273354	Gene3D:2.102.10.10	ProteinID:AQK70107.1
ProteinID:AQK70108.1	UniProt:B4F9N4	EMBL:BT033822	EMBL:BT040904	InterPro:Cyt_b6-f_cplx_Fe-S_su	InterPro:Cyt_b6_f_Rieske
EMBL:EU975238	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009496	GO:GO:0009579
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016679
GO:GO:0022900	GO:GO:0042651	GO:GO:0045158	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941
InterPro:IPR036922	HAMAP:MF_01335	PFAM:PF00355	PFAM:PF08802	PRINTS:PR00162	PFscan:PS51296
PANTHER:PTHR10134	PANTHER:PTHR10134:SF5	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C
SUPFAM:SSF50022	TMHMM:TMhelix	UniParc:UPI00017B6204	EnsemblPlantsGene:Zm00001d016134	EnsemblPlants:Zm00001d016134_P002	EnsemblPlants:Zm00001d016134_T002

Description

iron-sulfur protein1 iron-sulfur protein1

Coordinates

chr5:-:146042207..146043738

Molecular Weight (calculated)

24055.8 Da

IEP (calculated)

8.472

GRAVY (calculated)

-0.110

Length

226 amino acids

Sequence
(BLAST)

001: MATSAALSTA ANPTQLYRSR ASLGKPVKGL GLSMGRERAQ RSIVCQAASS ISADRVPDME KRKLMNLLLL GAISLPTVGM VVPYGAFFVP AGSGNAGGGT
101: YAKDKLGNDI TVEAWLNTHG PNDRTLAQGL KGDPTYLVVE QDKTLATYGI NAVCTHLGCV VPWNGAENKF ICPCHGSQYN NQGKVVRGPA PLSLALVHAD
201: VDDGKVLFVP WVETDFRTGE DPWWKA

Best Arabidopsis Sequence Match ( AT4G03280.1 )
(BLAST)

001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS

Arabidopsis Description

PETCCytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.