Factsheet for VIT_03s0017g00940.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 4
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g03850.t01	Wine grape	plastid	95.36	81.14
GSMUA_Achr9P24590_001	Banana	plastid	84.54	71.93
VIT_12s0134g00510.t01	Wine grape	plastid	80.93	69.47
Os07t0556200-01	Rice	plastid	79.9	68.89
EES19551	Sorghum	plastid	78.35	67.26
Zm00001d016134_P002	Maize	plastid	76.29	65.49
Zm00001d053432_P001	Maize	plastid	76.29	65.2
TraesCS2A01G207900.1	Wheat	plastid	73.71	64.41
TraesCS2B01G234500.1	Wheat	plastid	73.71	64.41
TraesCS2D01G214700.1	Wheat	plastid	73.71	64.41
HORVU2Hr1G041610.3	Barley	plastid	73.71	61.9
GSMUA_Achr10P...	Banana	plastid	65.98	59.53

Protein Annotations

KEGG:00195+1.10.9.1	MapMan:1.1.2.3	Gene3D:1.20.5.700	EntrezGene:100245219	Gene3D:2.102.10.10	ProteinID:CCB57997
ProteinID:CCB57997.1	InterPro:Cyt_b6-f_cplx_Fe-S_su	InterPro:Cyt_b6_f_Rieske	UniProt:F6HTI7	EMBL:FN596248	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009496	GO:GO:0009579	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016679	GO:GO:0022900	GO:GO:0042651
GO:GO:0045158	GO:GO:0051537	GO:GO:0055114	InterPro:IPR017941	InterPro:IPR036922	EntrezGene:LOC100245219
HAMAP:MF_01335	PFAM:PF00355	PFAM:PF08802	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134
PANTHER:PTHR10134:SF5	InterPro:Rieske_2Fe-2S	InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	SUPFAM:SSF50022
TMHMM:TMhelix	UniParc:UPI00015CBD3A	ArrayExpress:VIT_03s0017g00940	EnsemblPlantsGene:VIT_03s0017g00940	EnsemblPlants:VIT_03s0017g00940.t01	unigene:Vvi.24875
RefSeq:XP_002265183	RefSeq:XP_002265183.2	RefSeq:XP_010648158.1	SEG:seg	:	:

Description

Cytochrome b6-f complex iron-sulfur subunit [Source:UniProtKB/TrEMBL;Acc:F6HTI7]

Coordinates

chr3:-:16198440..16209850

Molecular Weight (calculated)

20647.9 Da

IEP (calculated)

7.407

GRAVY (calculated)

-0.056

Length

194 amino acids

Sequence
(BLAST)

001: MSPFVGKGKG LKIKCQATSI PANRVPDMGK RKLMNLLLLG VVSLPSAGML IPYATFFAPP GTGSAGGGTV AKDALGNDVI ADEWLKTHGP GDRTLTQGLK
101: GDPTYLVVED DKTLATYGIN AVCTHLGCVV PWNTAENKFI CPCHGSQYNN QGRVVRGPAP LSLALAHADI DDGKVVFIPW VETDFRTGED PWWA

Best Arabidopsis Sequence Match ( AT4G03280.1 )
(BLAST)

001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS

Arabidopsis Description

PETCCytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.