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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
KXG30740

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G03280.1 KXG30740 AT4G39710.1 12424338
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d053432_P001 Maize plastid 95.58 95.15
Zm00001d016134_P002 Maize plastid 95.13 95.13
Os07t0556200-01 Rice plastid 85.84 86.22
TraesCS2D01G214700.1 Wheat plastid 82.74 84.23
TraesCS2B01G234500.1 Wheat plastid 82.74 84.23
TraesCS2A01G207900.1 Wheat plastid 82.74 84.23
VIT_03s0017g00940.t01 Wine grape mitochondrion 67.26 78.35
HORVU2Hr1G041610.3 Barley plastid 78.76 77.06
GSMUA_Achr9P24590_001 Banana plastid 76.99 76.32
VIT_19s0014g03850.t01 Wine grape plastid 73.01 72.37
Solyc12g005630.1.1 Tomato plastid 73.01 71.43
PGSC0003DMT400035747 Potato plastid 72.12 70.87
KRH26877 Soybean plastid 70.8 70.48
KRH22477 Soybean nucleus, plastid 69.91 69.6
AT4G03280.1 Thale cress plastid 69.91 69.0
VIT_12s0134g00510.t01 Wine grape plastid 68.58 68.58
CDY17951 Canola plastid 69.91 68.4
CDX90891 Canola plastid 69.91 68.4
Bra000837.1-P Field mustard plastid 69.91 68.4
CDY22118 Canola plastid 69.03 67.53
Bra034200.1-P Field mustard plastid 69.03 67.53
CDY21952 Canola plastid 68.58 67.1
GSMUA_Achr10P... Banana plastid 63.72 66.98
Protein Annotations
KEGG:00195+1.10.9.1MapMan:1.1.2.3Gene3D:1.20.5.700Gene3D:2.102.10.10EntrezGene:8058472UniProt:C5YY74
InterPro:Cyt_b6-f_cplx_Fe-S_suInterPro:Cyt_b6_f_RieskeEnsemblPlants:EES19551ProteinID:EES19551ProteinID:EES19551.1GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005886GO:GO:0006091GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009496
GO:GO:0009535GO:GO:0009536GO:GO:0009579GO:GO:0009605GO:GO:0009607GO:GO:0009628
GO:GO:0009941GO:GO:0009987GO:GO:0010196GO:GO:0015979GO:GO:0016020GO:GO:0016021
GO:GO:0016491GO:GO:0016679GO:GO:0022900GO:GO:0042651GO:GO:0042742GO:GO:0045158
GO:GO:0051537GO:GO:0055114GO:GO:0080167InterPro:IPR017941InterPro:IPR036922HAMAP:MF_01335
PFAM:PF00355PFAM:PF08802PRINTS:PR00162PFscan:PS51296PANTHER:PTHR10134PANTHER:PTHR10134:SF5
MetaCyc:PWY-101InterPro:Rieske_2Fe-2SInterPro:Rieske_2Fe-2S_sfInterPro:Rieske_Fe-S_protInterPro:Rieske_Fe-S_prot_CEnsemblPlantsGene:SORBI_3009G143100
SUPFAM:SSF50022unigene:Sbi.866TMHMM:TMhelixUniParc:UPI0001A89414RefSeq:XP_002441121.1SEG:seg
Description
hypothetical protein
Coordinates
chr9:-:50039522..50041289
Molecular Weight (calculated)
23987.8 Da
IEP (calculated)
8.127
GRAVY (calculated)
-0.121
Length
226 amino acids
Sequence
(BLAST)
001: MATTAALSTA ANPTHQLCRS RATLGKPVKG LGLGMGRERA QSITCQAASS IPADRVPDME KRKLMNLLLL GAISLPTVGM VVPYGAFFVP AGSGGAGGGT
101: YAKDKLGNDI TVDEWLKTHG PNDRTLAQGL KGDPTYLVVE QDKTLATYGI NAVCTHLGCV VPWNGAENKF ICPCHGSQYN NQGKVVRGPA PLSLALVHAD
201: VDDGKVLFVP WVETDFRTGE DPWWKA
Best Arabidopsis Sequence Match ( AT4G03280.1 )
(BLAST)
001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS
Arabidopsis Description
PETCCytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR03]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.