Factsheet for GSMUA_Achr9P24590_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P24380_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03280.1	GSMUA_Achr5P24380_001	AT4G39710.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0017g00940.t01	Wine grape	mitochondrion	71.93	84.54
VIT_19s0014g03850.t01	Wine grape	plastid	80.7	80.7
KRH26877	Soybean	plastid	79.82	80.18
KRH22477	Soybean	nucleus, plastid	79.39	79.74
Os07t0556200-01	Rice	plastid	76.32	77.33
EES19551	Sorghum	plastid	76.32	76.99
GSMUA_Achr10P...	Banana	plastid	71.93	76.28
Solyc12g005630.1.1	Tomato	plastid	76.75	75.76
VIT_12s0134g00510.t01	Wine grape	plastid	75.0	75.66
PGSC0003DMT400035747	Potato	plastid	75.44	74.78
Zm00001d053432_P001	Maize	plastid	74.12	74.45
Zm00001d016134_P002	Maize	plastid	73.25	73.89
TraesCS2A01G207900.1	Wheat	plastid	71.49	73.42
TraesCS2B01G234500.1	Wheat	plastid	71.49	73.42
TraesCS2D01G214700.1	Wheat	plastid	71.49	73.42
CDY22118	Canola	plastid	73.25	72.29
Bra034200.1-P	Field mustard	plastid	73.25	72.29
AT4G03280.1	Thale cress	plastid	72.37	72.05
CDY21952	Canola	plastid	72.81	71.86
CDY17951	Canola	plastid	72.37	71.43
CDX90891	Canola	plastid	72.37	71.43
Bra000837.1-P	Field mustard	plastid	72.37	71.43
HORVU2Hr1G041610.3	Barley	plastid	68.86	67.97

Protein Annotations

KEGG:00195+1.10.9.1	MapMan:1.1.2.3	Gene3D:1.20.5.700	Gene3D:2.102.10.10	InterPro:Cyt_b6-f_cplx_Fe-S_su	InterPro:Cyt_b6_f_Rieske
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009496	GO:GO:0009579	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0016679	GO:GO:0022900
GO:GO:0042651	GO:GO:0045158	GO:GO:0051537	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr9G24590_001	EnsemblPlants:GSMUA_Achr9P24590_001
EnsemblPlants:GSMUA_Achr9T24590_001	InterPro:IPR017941	InterPro:IPR036922	UniProt:M0U366	HAMAP:MF_01335	PFAM:PF00355
PFAM:PF08802	PRINTS:PR00162	PFscan:PS51296	PANTHER:PTHR10134	PANTHER:PTHR10134:SF5	InterPro:Rieske_2Fe-2S
InterPro:Rieske_2Fe-2S_sf	InterPro:Rieske_Fe-S_prot	InterPro:Rieske_Fe-S_prot_C	SUPFAM:SSF50022	TMHMM:TMhelix	UniParc:UPI000294BF26
SEG:seg	:	:	:	:	:

Description

Cytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr9G24590_001]

Coordinates

chr9:-:29337570..29341646

Molecular Weight (calculated)

24018.8 Da

IEP (calculated)

8.479

GRAVY (calculated)

-0.081

Length

228 amino acids

Sequence
(BLAST)

001: MASTTLSTAA APSQLSSGKN GIFSPSRALL SRPARGLGLG KERSGKITCQ ATSIPADRVP DMGKRQLLNL LLLGTLSLPT AGMLIPYTYF FVPPGSGGAG
101: GGTVAKDALG NDVTLDGWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNAAE KKFICPCHGS QYNNQGRVVR GPAPLSLALA
201: HVDVDDGKVV FVPWVETDFR TGEDPWWA

Best Arabidopsis Sequence Match ( AT4G03280.1 )
(BLAST)

001: MASSSLSPAT QLGSSRSALM AMSSGLFVKP TKMNHQMVRK EKIGLRISCQ ASSIPADRVP DMEKRKTLNL LLLGALSLPT GYMLVPYATF FVPPGTGGGG
101: GGTPAKDALG NDVVAAEWLK THGPGDRTLT QGLKGDPTYL VVENDKTLAT YGINAVCTHL GCVVPWNKAE NKFLCPCHGS QYNAQGRVVR GPAPLSLALA
201: HADIDEAGKV LFVPWVETDF RTGDAPWWS

Arabidopsis Description

PETCCytochrome b6-f complex iron-sulfur subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR03]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.