Factsheet for GSMUA_Achr5P24380_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr9P24590_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G39710.1	GSMUA_Achr10P...	AT4G03280.1	12424338
AT4G39710.1	GSMUA_Achr9P24590_001	AT4G03280.1	12424338

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0031g01150.t01	Wine grape	plastid	58.55	66.5
TraesCS6D01G282000.1	Wheat	plastid	62.39	65.77
TraesCS6B01G331700.1	Wheat	plastid	61.97	65.61
TraesCS6A01G302500.1	Wheat	plastid	61.97	65.32
KXG30740	Sorghum	plastid	60.26	62.39
PGSC0003DMT400056671	Potato	plastid	55.56	62.2
Zm00001d018077_P002	Maize	plastid	59.83	61.95
Os02t0751600-01	Rice	plastid	60.68	61.74
Solyc04g054520.2.1	Tomato	nucleus	55.13	61.72
HORVU6Hr1G075080.2	Barley	plastid	61.54	61.02
KRH43236	Soybean	nucleus	53.85	60.29
AT4G39710.1	Thale cress	plastid	55.56	59.91
KRH59400	Soybean	extracellular, vacuole	38.46	56.96
CDY42000	Canola	plastid	48.29	56.5
Bra011839.1-P	Field mustard	plastid	48.29	56.5
CDY42648	Canola	plastid	47.86	56.0
GSMUA_Achr8P06890_001	Banana	plastid	37.18	38.84
GSMUA_Achr7P22790_001	Banana	endoplasmic reticulum	20.94	32.24
GSMUA_Achr7P23820_001	Banana	plastid	23.5	23.31
GSMUA_Achr3P07930_001	Banana	nucleus	22.22	8.37

Protein Annotations

MapMan:1.1.8.1.4.4	MapMan:18.12.2	Gene3D:3.10.50.40	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009987	GO:GO:0016020	GO:GO:0016853	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G24380_001	EnsemblPlants:GSMUA_Achr5P24380_001
EnsemblPlants:GSMUA_Achr5T24380_001	InterPro:IPR001179	UniProt:M0T1B3	PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom
PFscan:PS50059	PANTHER:PTHR10516	PANTHER:PTHR10516:SF269	SUPFAM:SSF54534	UniParc:UPI0002968404	SEG:seg

Description

peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G24380_001]

Coordinates

chr5:-:25770548..25773850

Molecular Weight (calculated)

24118.2 Da

IEP (calculated)

8.601

GRAVY (calculated)

0.250

Length

234 amino acids

Sequence
(BLAST)

001: MAISALSVAV SNPRLLPSLP KSHKAPPFLA RSASPLHLSL PAPSLPVGDP AEEAATASTS SSSSFLAPVP STSRRLFGVG VGILAASSFA SDASATRIEY
101: YATVGEPLCD MSFARSGLGY CDVAIGTGVE APRGELINVH YTARFADGTV FDSSYKRGRP LTMRIGVGKV LPGLDQGIIG GGGVPPMLVG GKRKLLIPPL
201: LAYGPEPAGC FQGDCNIPAN ATLLYDILFV GVYK

Best Arabidopsis Sequence Match ( AT4G39710.3 )
(BLAST)

001: MAISTLTLTQ SLYTRSFRPT IFFSSSSSSS FSCLCSSSSD CEPKLSVKKR VFGVGLGFLA SSILSLTPLD ADATRIDYYA TVGDPLCEYS YAKSGLGFCD
101: LDVGFGDEAP RGVLVNIHYT ARFADGTLFD SSYKRARPLT MRIGVGKVIR GLDQGILGGE GVPPMRVGGK RKLQIPPKLA YGPEPAGCFS GDCNIPGNAT
201: LLYDINFVEI YPGSNTR

Arabidopsis Description

PNSL4Photosynthetic NDH subunit of lumenal location 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SCY3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.