Factsheet for GSMUA_Achr3P07930_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr9P09250_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25340.1	GSMUA_Achr9P09250_001	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g007170.2.1	Tomato	nucleus	35.59	46.04
PGSC0003DMT400079626	Potato	nucleus	35.1	44.95
CDX92695	Canola	nucleus	32.21	44.84
KRH77741	Soybean	nucleus	36.23	44.73
KRH27794	Soybean	nucleus	36.23	44.73
Bra019172.1-P	Field mustard	nucleus	32.69	44.23
VIT_16s0022g01760.t01	Wine grape	nucleus	37.36	44.19
Os09t0293900-01	Rice	nucleus	30.11	44.1
CDY49705	Canola	nucleus	32.53	44.01
CDX89421	Canola	nucleus	32.53	43.72
AT4G25340.1	Thale cress	nucleus	33.33	43.4
Bra013887.1-P	Field mustard	nucleus	32.21	43.38
KXG35300	Sorghum	nucleus	30.27	42.15
TraesCS5B01G156700.1	Wheat	nucleus	29.15	41.8
Zm00001d025522_P001	Maize	plasma membrane	33.17	41.62
CDX94456	Canola	nucleus	25.44	41.47
Zm00001d019987_P001	Maize	cytosol	29.63	41.44
VIT_19s0093g00480.t01	Wine grape	nucleus	37.04	41.44
TraesCS5D01G164000.1	Wheat	nucleus	28.82	41.34
TraesCS5A01G158900.1	Wheat	nucleus	28.66	41.2
TraesCS2A01G314800.2	Wheat	nucleus	31.24	41.1
EES10880	Sorghum	nucleus	32.85	40.8
Os04t0446500-02	Rice	nucleus	34.46	40.76
TraesCS2B01G333300.1	Wheat	nucleus	31.72	40.45
TraesCS2D01G313000.1	Wheat	nucleus	31.56	40.25
HORVU2Hr1G078350.3	Barley	nucleus	31.72	39.96
PGSC0003DMT400033263	Potato	nucleus	33.66	37.86
Zm00001d005534_P001	Maize	nucleus	22.71	37.8
Solyc01g091340.2.1	Tomato	nucleus	33.33	37.57
HORVU5Hr1G049560.12	Barley	nucleus	27.7	37.23
Zm00001d003535_P001	Maize	nucleus	8.05	35.71
KRG89916	Soybean	nucleus	31.4	32.45
GSMUA_Achr7P22790_001	Banana	endoplasmic reticulum	7.89	32.24
GSMUA_Achr8P06890_001	Banana	plastid	9.18	25.45
Os09t0103800-00	Rice	cytosol	20.93	25.0
GSMUA_Achr7P23820_001	Banana	plastid	8.53	22.46
GSMUA_Achr5P24380_001	Banana	plastid	8.37	22.22
Solyc02g005290.2.1	Tomato	nucleus	17.23	20.66
PGSC0003DMT400037664	Potato	mitochondrion	9.02	20.0

Protein Annotations

MapMan:18.12.2	Gene3D:2.60.120.340	Gene3D:3.10.50.40	GO:GO:0000413	GO:GO:0003674	GO:GO:0003755
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829	GO:GO:0006334	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016853	GO:GO:0019538
GO:GO:0042393	EnsemblPlantsGene:GSMUA_Achr3G07930_001	EnsemblPlants:GSMUA_Achr3P07930_001	EnsemblPlants:GSMUA_Achr3T07930_001	InterPro:IPR001179	UniProt:M0SCR0
PFAM:PF00254	InterPro:PPIase_FKBP	InterPro:PPIase_FKBP_dom	PFscan:PS50059	PANTHER:PTHR43811	PANTHER:PTHR43811:SF9
SUPFAM:SSF54534	UniParc:UPI0002956E4C	SEG:seg	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G07930_001]

Coordinates

chr3:-:5512270..5517515

Molecular Weight (calculated)

68619.7 Da

IEP (calculated)

5.820

GRAVY (calculated)

-0.973

Length

621 amino acids

Sequence
(BLAST)

001: MAFWGVEVKP GKPYTHVYDE ARGRLRITMR IHYSCFLLIQ ATLGNGKATS KSVVQCNVGK KSPILLCSLV PDKAESCHLE LEFEEDNEVV FSVLGQRSVH
101: LCGFYPGARR GHGDGGDETD SYGEDIGEED SESYGSFDTE EDEYESDFID DGDIEMFPSS PQRKSSVIIE EIVDDDKPAH GNGIRRRLKK KSQLVESDSG
201: DDDTKLQLVV KSNNNTEVFE SEDDDGFPIS FSVKKKDAAN NFEVDKKSGA TVNDDKKIKI DAISQRDEST RDATQPCDSS VASVVVPETD GISKKKKRTR
301: EDVAEAKTET NENNHMIALR MDVTESDGKK KKKKEKTKKD KKSDVGDDYA MERTEEGFKG DGNEVFNASS LEKNPPLEAE KLHYDHDGSA SGKKKKNKKK
401: RAKVDEAHEN AGADAEAELQ EGSQHGTKSK LDSDDTELQE SANNHHSDNL TVEEPPKDSV PDDNGLAQDA KKKKKKKKTK KDKSHDKDST SKEVSLNPLD
501: AEHKAEPQKT RTFSNGLRIE ELSMGKPDGK KASPGSRVSV NYIGKLNNGK IFDSNIGKRP FKFRLGVGHV IKGWDVGIAG MRIGDKRRLI IPPSMGYGAS
601: PAGKIPGNSW LVFDVELVDV N

Best Arabidopsis Sequence Match ( AT4G25340.1 )
(BLAST)

001: MGFWGLEVKP GKPQAYNPKN EQGKIHVTQA TLGTGLSKEK SVIQCSIGDK APIALCSLLP NKIECCPLNL EFDDDDEPVE FTVTGDRSIH LSGFLEYYQD
101: DEDDYEHDED DSDGIDVGES EEDDSCEYDS EEDEQLDEFE DFLDSNLERY RNAAAPKSGV IIEEIEDEEK PAKDNKAKQT KKKSQASEGE NAKKQIVAIE
201: GAHVPVLESE DEDEDGLPIP KGKSSEVENA SGEKMVVDND EQGSNKKRKA KAAEQDDGQE SANKSKKKKN QKEKKKGENV LNEEAGQVQT GNVLKKQDIS
301: QISSNTKAQD GTANNAMSES SKTPDKSAEK KTKNKKKKKP SDEAAEISGT VEKQTPADSK SSQVRTYPNG LIVEELSMGK PNGKRADPGK TVSVRYIGKL
401: QKNGKIFDSN IGKSPFKFRL GIGSVIKGWD VGVNGMRVGD KRKLTIPPSM GYGVKGAGGQ IPPNSWLTFD VELINVQ

Arabidopsis Description

FKBP53Peptidyl-prolyl cis-trans isomerase FKBP53 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.